Gene CDK11_c (S.moellendorffii)

CDK11_c

Species: S.moellendorffii
Alias: CDK11_c
External Links:
Annotation:

Classification

Group: CMGC
Family: CDK
Subfamily: CDK11

Sequence

Name Sequence Type Origin Length Description Download
CDK11_c.AA Protein None 589 None Fasta, JSON
CDK11_c.NA RNA None 1770 None Fasta, JSON
CDK11_c.kin_dom Protein Kinase Domain None 33 None Fasta, JSON

Protein domain

Protein domains of CDK11_c.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CDK11_c.AA PITSLRE 78-122 63 3.2e-25 88.85 In-house 1-47 (295) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-47/295
Sequence Identity: 63% (30 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMV--HERDGFPMTS
|. ||.|.|||||| |||.||. .|||||||.||    |..||| ||
FQCLNRIHEGTYGVVYRAKDKRTDEIVALKRLKMERQKEKEGFPITS
Kinase CDK11_c.AA CDK 78-122 49 1.6e-23 71.94 In-house 1-55 (284) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-55/284
Sequence Identity: 49% (27 aa)

FERLNKIDEGTYGVLYRARDKKSG-----EIVALKRVKMVH-----ERDGFPMTS
.|.|.|| |||||| |.||||..|     .|||||...| .     |..|||.|.
YEKLEKIGEGTYGVVYKARDKQTGRKKTGQIVALKKIRMENEGREEEKEGFPITA
Kinase CDK11_c.AA CDK10 78-122 60 4.8e-21 69.72 In-house 1-45 (285) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-45/285
Sequence Identity: 60% (27 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHERDGFPMTS
||.||.. |||||. ||||| .| ||||||.|.| .|.|| |. .
FEKLNRVGEGTYGIVYRARDMRSDEIVALKKVRMDKEKDGLPISG
Kinase CDK11_c.AA CDC2 78-122 40 8.6e-21 60.15 In-house 1-47 (301) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-47/301
Sequence Identity: 40% (19 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHERDG--FPMTS
.....|| |||||| |...|.....|||||...  .| .|  .| |.
YQKIEKIGEGTYGVVYKCKDMQTNQIVALKKIRLEQEDEGDGVPSTA
Kinase CDK11_c.AA CRK7 78-122 47 6.9e-19 61.58 In-house 1-48 (343) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-48/343
Sequence Identity: 47% (23 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHE---RDGFPMTS
.|... | |||||  | |..|. ||.||||.|.| .|   ..||| |.
YEMIMQIGEGTYGQVYKAKNKHTGEMVALKKVRMDNEKIKKEGFPITA
Kinase CDK11_c.AA CDK5 78-121 54 2e-18 54.38 In-house 1-44 (287) Show / Hide 
Range on Protein: 78-121
Range on HMM: 1-44/287
Sequence Identity: 54% (24 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHERDGFPMT
.|...|| |||||. |.||.|...||||||||..  |  | | |
YEKMEKIGEGTYGTVYKARNKETHEIVALKRVRLDSEDEGVPST
Kinase CDK11_c.AA CMGC 78-122 33 7.8e-16 47.63 In-house 1-68 (513) Show / Hide 
Range on Protein: 78-122
Range on HMM: 1-68/513
Sequence Identity: 33% (23 aa)

FERLNKIDEGTYGVLYRARD--------------KKSGEIVALKRVK---MVH------ERDGFPMTS
.| ..|| |||||| |..||              ....||||.|..|   . .      |.||||...
YEIIKKIGEGTYGVVYKCRDKRTNQKKDNGQAHHHETNEIVAIKKIKNPFYEEQAKSTIEKDGFPIRA
Kinase CDK11_c.AA CDK7 78-113 37 3.4e-14 33.79 In-house 1-37 (288) Show / Hide 
Range on Protein: 78-113
Range on HMM: 1-37/288
Sequence Identity: 37% (14 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVK-MVH
.| . .| ||.... |.|.|...|.||| |..| . |
YEKIKHIGEGQFATVYKACDHQTGQIVAIKKIKKLGH
Kinase CDK11_c.AA CDK4 78-120 42 1.2e-12 39.48 In-house 1-45 (290) Show / Hide 
Range on Protein: 78-120
Range on HMM: 1-45/290
Sequence Identity: 42% (19 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHERD--GFPM
.. .. | || ||  ||||| ..| .||||.|.   . .  | ||
YQCVAEIGEGAYGTVYRARDLHTGHFVALKQVRIPIGEEGGGMPM
Kinase CDK11_c.AA CDK9 78-121 38 2.1e-12 38.88 In-house 1-55 (340) Show / Hide 
Range on Protein: 78-121
Range on HMM: 1-55/340
Sequence Identity: 38% (21 aa)

FERLNKIDEGTYG-----------VLYRARDKKSGEIVALKRVKMVHERDGFPMT
.|.|.||  ||.|             ..|| || . .||.|.| |  |. ||| |
YEKLAKIGQGTFGQVLQGRKSRNSEVFKARHKKNKRMVAMKKVLMENEKEGFPIT
Kinase CDK11_c.AA Pkinase 78-124 34 8.5e-07 25.12 Pfam 1-47 (293) Show / Hide 
Range on Protein: 78-124
Range on HMM: 1-47/293
Sequence Identity: 34% (16 aa)

FERLNKIDEGTYGVLYRARDKKSGEIVALKRVKMVHERDGFPMTSRK
.... || .|..|. |....|..|.|||.|..| .||......| |.
YHIGRKIGSGSFGCVYKCHHKGTGKIVAVKIIKKRHEKSWKDQTHRR
Exo_endo_phos CDK11_c.AA Exo_endo_phos 246-393 13 5e-06 22.93 Pfam 94-200 (200) Show / Hide 
Range on Protein: 246-393
Range on HMM: 94-200/200
Sequence Identity: 13% (20 aa)

APGDSRGAKGNRDPRDLRGRLCRILKRGRRIIIVGHLNISPYPIDSCDPGPKF-DTDPSRQWFRSLLVSEGGAFSDSFRVFHPEIAEAYTCWSQASGAEE
.... . .  |.. .|.. .|     |.. .|..| .|. .  .|. ..  .  ...                        ...|  .||.|..  ... 
PWHG-WFDQRNQQYWDIYDFLQF---RHDPWIWCGDFNYRHDEWDY-NWK-RRKMWW------------------------EHPITFPYTWWYYRNTSRK

FNYGSRIDHVLIAGPCAGHCQCPDGSHENSSCDGFAECGTDMCDILLEF
 |....||...  |  . .. ..  ..|        . . | | ....|
HNTPWWIDYIWWSG-WM-RV-WC-IHDE--------HMPSDHCPVYATF
Zf-GRF CDK11_c.AA zf-GRF 547-575 50 1e-08 34.47 Pfam 1-30 (49) Show / Hide 
Range on Protein: 547-575
Range on HMM: 1-30/49
Sequence Identity: 50% (15 aa)

LSCKGHG-ETCVVRTVKKAGPNLGRGFYVC
  |...|   ||..||.| ||| || ||.|
PLCPMCGPQRCVIKTVRKTGPNPGRQFYKC