Gene TAF1-1 (S.moellendorffii)

TAF1-1

Species: S.moellendorffii
Alias: TAF1-1
External Links:
Annotation:

Classification

Group: Atypical
Family: TAF1

Sequence

Name Sequence Type Origin Length Description Download
TAF1-1.AA Protein None 1134 None Fasta, JSON
TAF1-1.NA RNA None 3402 None Fasta, JSON

Protein domain

Protein domains of TAF1-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
TBP-binding TAF1-1.AA TBP-binding 47-82 33 2.1e-05 20.88 Pfam 1-42 (77) Show / Hide 
Range on Protein: 47-82
Range on HMM: 1-42/77
Sequence Identity: 33% (14 aa)

EEEEEEEEEESSGRML-GFMFGNVDDTGDLDVE-Y----LDQ
   ....|..| |  | ||.|||.|  |.|. . .    ||.
SDDDNDNERNSRGFNLTGFLFGNIDEHGQLEDDDFREQGLDE
DUF3591 TAF1-1.AA DUF3591 583-643 43 1e-12 47.12 Pfam 1-61 (494) Show / Hide 
Range on Protein: 583-643
Range on HMM: 1-61/494
Sequence Identity: 43% (28 aa)

FNI--SNDKYYVVKKTPQQQKLQAKKRAIVGGVKVAHSVPALRLQTM--KPKLTNKDLANFHRPK
|||  |||.||  .| . |.|     |.  |.. . || ||||||    | ||. ... .||||.
FNIIFSNDEYYDMLKENHQNKV----RQTIGNLNIEHSMPALRLQWPYYKVKLNKREARSFHRPH
UBQ TAF1-1.AA UBQ 667-740 28 4.2e-11 44.12 SMART 1-72 (72) Show / Hide 
Range on Protein: 667-740
Range on HMM: 1-72/72
Sequence Identity: 28% (22 aa)

MKVILKTLGG-KGSRLHIDASD-TLETFKMKASKKFGDLKPSENTKLMYSGRELESNKSFAEQRVPPNSVLHLVRT
|.. .|...| |   . .. || |....| .  .| |   | |  .|.|.|. || . . |.  . |.|..||. .
MQIFVKWQNGWKTFTFEVKPSDWTVSELKQHIEDKEGI--PPEQQRLIYQGK-LEDD-TLADYNIQPGSTIHLMVR
Ubiquitin TAF1-1.AA ubiquitin 672-742 29 2.2e-08 33.97 Pfam 1-73 (73) Show / Hide 
Range on Protein: 672-742
Range on HMM: 1-73/73
Sequence Identity: 29% (22 aa)

KTLGGK--GSRLHIDASDTLETFKMKASKKFGDLKPSENTKLMYSGREL-ESNKSFAEQRVPPNS-VLHLVRTKV
|||.||     . .| .|| |..|.| ..|.|   | .. .|.|.|..| | ... ..  . ..| ..|.|.   
KTLDGKGSTFTFEVDPDDTVEQLKQKIQQKQG--IPPDQQRLIYKGKQLREDHRTLSDYNIQDGSFTIHMVLRQR
DUF3591 TAF1-1.AA DUF3591 747-1128 33 1.2e-86 298.97 Pfam 85-466 (494) Show / Hide 
Range on Protein: 747-1128
Range on HMM: 85-466/494
Sequence Identity: 33% (136 aa)

KAQRLPGENKPTRPPGAFK--KKSELSVKD-GHVALMEYCEERPLLLSNVGMGAVLSTYYRKMSPTDSTAATLKEERGSWIGAVLPLEPAEDSPF--LGN
|... ..| .  ..   ||  . ..|...| ..| ||||||| |...||.|||  . .||||.. .|..  .|..     ||    | |   |||  .|.
KHDKREKERMGKDISEVFKMRTTKDLTLGDNSPVILMEYCEEYPPVMSNFGMGSKIINYYRKKHMEDTHRPKLDD-----IGETHVLHPQDKSPFWNFGH

IRLGETQSCLETNMYRAPVFQHRVSSTDFLLVRSSK-GKLS----LRRIDGLHVVGQQEPHIEVIAPSSKTVLHYLGNRLLVHVYREFR-AKDKPGMSSQ
.  ||.. .|. ||||||.|.| ...||||..||.  |. .    || || . .|||..| .|| .| |. |     ||| . ||| |.  |....    
VHPGEIVPTLYNNMYRAPIFKHKPEPTDFLCIRSTTPGGHGQKYYLRNIDHMFCVGQTFPVMEVPGPHSRKVTNMSKNRLKMIVYRLFWGQKSPRHR---

IGADELMAHF-PSLTDGFIRKRLKHCADLQRGP-HG-DMRWVMRQGYRIPSE-EELRRMVTPENVCSYESMQAGQHHLKRMGVNKLTH----------QN
|  .....|| |  ... .|.||| ... ||    .    |... |...|.| ||.| |.|||..|.|||||.||.||.. |.|..             .
ISIHDITKHFFPDQNEMQNRQRLKEFMKYQRDGGMDNQGWWKLKEGETLPDEFEEIRKMITPEDCCLYESMQVGQQHLEDAGYNNTDEFKRDYQQIQEDD

GLAAAICQIPDVPVTLATAAHIERELLITPWNLTANFVAAMMQGRNGIER--LEIIGPGDPTGRGLGFSYIRV-ALRPP--NTGAMVEKKAAAARGGGAV
. ..              .. |. |.  .|||.| ||. |. .      .  |.. |.|||||.|.|||.||.   ..   ..|  ...|..      ||
DEETKK-----------VQMKIDLEQMMAPWNTTRNFINATQG------KAMLQLHGEGDPTGCGEGFSFIRTKSMKGGFLKQGEGPQDKPKK-----AV

TGTDADLRRLSM
.||.|..|....
AGTRAKERGGHS