Gene RIO1-1 (S.moellendorffii)

RIO1-1

Species: S.moellendorffii
Alias: RIO1-1
External Links:
Annotation:

Classification

Group: Atypical
Family: RIO
Subfamily: RIO1

Sequence

Name Sequence Type Origin Length Description Download
RIO1-1.AA Protein None 508 None Fasta, JSON
RIO1-1.NA RNA None 1521 None Fasta, JSON

Protein domain

Protein domains of RIO1-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase RIO1-1.AA RIO1 131-321 58 1.5e-127 430.05 In-house 33-225 (225) Show / Hide 
Range on Protein: 131-321
Range on HMM: 33-225/225
Sequence Identity: 58% (114 aa)

ANVYHATTESGE--ELAVKVYKTSILVFKDRDKYVQGDFRFRHGYSKHNPRKMVKTWAEKEMRNLLRLKASGIRAPSPLVLRLHVLVMDFIGKSDGWAAP
.||||| .  |.  | |.|.|||||||||||.||| | ||||||..|||||||.|.||||||||| |.  | | .| |.... .||.|.|||| || |||
TNVYHASETNGKRAEYAIKIYKTSILVFKDREKYVDGEFRFRHGHCKHNPRKMIKIWAEKEMRNLKRIYQSEIPCPEPIMVKSNVLMMEFIGK-DGMAAP

RLKDAALSDTKYR-ESYLEIVQIMRTMYQRCRLVHGDLSEYNVLYHEGHLYIIDVSQSVDLDHPRALDFLRQDCVHVNDFFKKGGVAVMTVREL
||||. ... . . . |. ..| ||.||| |||||.||||||.|||.. ||.|||||||  ||| .|.|||.||. ||..|.| .|....||..
RLKDYQYKERDQYFHYYHQMIQYMRRMYQDCRLVHADLSEYNMLYHNDKLYMIDVSQSVEHDHPHSLEFLRMDCKNVNMYFMKHNVIIFPVRDI
Kinase RIO1-1.AA RIO1 132-321 51 7.79999999999e-123 383.54 Pfam 1-200 (200) Show / Hide 
Range on Protein: 132-321
Range on HMM: 1-200/200
Sequence Identity: 51% (103 aa)

NVYHATT-ESGE-ELAVKVYKTSILVFKDRDKYVQGDFRFRHGYSKHNPRKMVKTWAEKEMRNLLRLKASGIRAPSPLVLRLHVLVMDFIGKSDGWAAPR
|||||.. |.|. |.|||.|.|....||....|...||||||.|..||.|.||..|||||.||| |... |...| |  .. |||||.|||  |||.|||
NVYHAYSMEDGKDECAVKIYRTGTTCFKKMKRYRDYDFRFRHRYHHHNWRYMVRMWAEKEFRNLKRMYEAGVPCPKPIDWNRHVLVMEFIGDKDGWPAPR

LKDAA----LSDTKYRESYLEIVQ-IMRTMYQRCRLVHGDLSEYNVLYHEG-HLYIIDVSQSVDLDHPRALDFLRQDCVHVNDFFKKGGVA--VMTVREL
|||.     ||. . .| | ||.. .|| |||.|.||||||||||.|.|.. ...|||..|.|..|||.||.||. || ....||.. ||.  ||..||.
LKDVEMELELSEEEAEEIYDEIIREYMRRMYQECGLVHGDLSEYNILVHDDGKPWIIDWPQAVEHDHPHALEFLERDCRNIINFFRRKGVDERVMDFREI
RIO RIO1-1.AA RIO 71-327 47 1.6e-121 410.97 SMART 1-253 (253) Show / Hide 
Range on Protein: 71-327
Range on HMM: 1-253/253
Sequence Identity: 47% (131 aa)

EKSDRATVEQVLDPRTRMVLFKMLNRGVFHDIN--GCISTGKEASFCNCVFLSFNLLLFHLQANVYHATT----ESGEELAVKVYKTSILVFKDRDKYVQ
.| |.||.|.|.||||||.|.||.|||.. .||  ||||||||                   ||||||..    ..|.| |||.|.||...||....|.|
DKEDYATYEEVFDPRTRMTLYKMVNRGYIEEINNHGCISTGKE-------------------ANVYHAMGGDFDKNGNECAVKIYRTSTTEFKRMWRYIQ

GDFRFRHGYSKHNPRKMVKTWAEKEMRNLLRLKASGIRAPSPLVLRLHVLVMDFIGKSDGWAAPRLKDAALSDTKYR---ESYLEIVQIMRTMYQRCRLV
|||||.|||...|.||||. |||||.||| |....|...| |  .| |||||.|||. |||.||||||. . . .     | |  |.  || ||..|.||
GDFRFKHGYHHINWRKMVRLWAEKEFRNLQRMYEAGVPCPKPIAWRRHVLVMEFIGD-DGWPAPRLKDVEWEEWEMDFKWEYYWQIMEYMRKMYHECHLV

HGDLSEYNVLYH------EGHLYIIDVSQSVDLDHPRALDFLRQDCVHVNDFFKKGGVAVMT-VRELFDFIVD
|.||||||.|||      .. ..|||.||||..|||..|.||. |.  ...||.. || .   .||.|..|..
HADLSEYNMLYHDLEDENDCKVWIIDWSQSVECDHPMWLEFLERDIWNIINFFRRKGVDCDDIYREIFERITG
Kinase RIO1-1.AA RIO 131-335 35 3.4e-105 355.77 In-house 35-276 (276) Show / Hide 
Range on Protein: 131-335
Range on HMM: 35-276/276
Sequence Identity: 35% (87 aa)

ANVYHATTESGE-----------ELAVKVYKTSILVFKDRDKYVQGDFRFRHGYSKHNPRKMVKTWAEKEMRNLLRLKASGIRAPSPLVLRLHVLVMDFI
...||. .|.||           | | |...|....||||.||. |.|.|.|...|||.|.|...||||||||. ||  ||. .| |. .. ||||| ||
SDIYHCSNENGEDEKEDSKVIPTECAIKIHRTGRTSFKDRKKYRDGEFYFKHRHCKHNWRYMHRLWAEKEMRNMKRLYQSGFPCPEPIDYKRHVLVMEFI

GKSDGWAAPRLKDAALSDTKYR-ESYLEIVQIMRTMYQRCRLVHGDLSEYNVLYHEGHL-------YIIDVSQSVDLDHPRALDFLRQDCVHVNDFFKKG
.. |. .||..... ..  . . . |.. .. ||..|| |||||.|..|.| ..|.| .       |.||..|.|  ||| ||...| ||. ||.||.|.
NH-DQMPAPKYPMCQIHEHENMKHVYHQCMCYMRRLYQHCRLVHCDFNEFNMMWHDGKHDENDCGFYMIDFPQMVEHDHPHALWYFRRDCKCVNMFFMKR

GV-AVMTVRELFDFI------------------VDPSINDDQV
.| .....||.|||                    ....  .  
FVYEPFPEREMFDFVGFGDGYKYAYPDFKRDVKRTDTLDHENM
Kinase RIO1-1.AA RIO3 75-336 42 2.3e-73 246.69 In-house 1-254 (254) Show / Hide 
Range on Protein: 75-336
Range on HMM: 1-254/254
Sequence Identity: 42% (113 aa)

RATVEQVLDPRTRMVLFKMLNRGVFHDINGCISTGKEASFCNCVFLSFNLLLFHLQANVYHATTESGEELAVKVYKTSILVFKDRDKYVQGDFRFRHGYS
 .| |. .||.||....||.| |..  | |||.||||.     || ..   .   . .     |    . |.||.||..  ||.||||.. ||||.  .|
HSTAEKAVDPKTRLLMYKMVNSGMLETITGCIATGKES----VVFHAYGGSMEDEKEDSKVIPT----ICAIKVFKTTLNEFKNRDKYIKDDFRFKDRFS

KHNPRKMVKTWAEKEMRNLLRLKASGIRAPSPLVLRLHVLVMDFIGKSDGWAAPRLKDAALSDTKYRESYLEIVQIMRTMYQRCRLVHGDLSEYNVLYHE
| ||||. . |||||| || |.. .||  |. ..|. |.||| |||. |   ||.||.  |   . .|.| . . .|| .|  | ||| ||||||.|.| 
KLNPRKIHRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMSFIGH-DQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHA

GHLYIIDVSQSVDLDHPRALDFLRQDCVHVNDFFKKGGV-AVMTVRELFDFIVDPSINDDQVE
|....|||||||.  ||  |.|| .||  | .||.||||   .. ||||. .    |  |.  
GKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEA
Kinase RIO1-1.AA RIO1 80-112 75 5.2e-20 65.91 In-house 1-33 (225) Show / Hide 
Range on Protein: 80-112
Range on HMM: 1-33/225
Sequence Identity: 75% (25 aa)

QVLDPRTRMVLFKMLNRGVFHDINGCISTGKEA
||.||||||.||||| ||.  .||||||||||.
QVIDPRTRMILFKMLTRGIITEINGCISTGKET
Kinase RIO1-1.AA RIO 78-112 48 3.2e-18 59.07 In-house 1-35 (276) Show / Hide 
Range on Protein: 78-112
Range on HMM: 1-35/276
Sequence Identity: 48% (17 aa)

VEQVLDPRTRMVLFKMLNRGVFHDINGCISTGKEA
.||..||.|||...||.|||.   ...||..|||.
YEQTNDPYTRMIMYKMVNRGMVESVGNCIGVGKES