Gene ABC1-C-1 (S.moellendorffii)
ABC1-C-1
Species: S.moellendorffii
Alias: ABC1-C-1
External Links:
Annotation:
Sequence
Name | Sequence Type | Origin | Length | Description | Download |
---|---|---|---|---|---|
ABC1-C-1.AA | Protein | None | 611 | None | Fasta, JSON |
ABC1-C-1.NA | RNA | None | 1836 | None | Fasta, JSON |
Protein domains of ABC1-C-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
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Kinase | ABC1-C-1.AA | ABC1-C | 300-445 | 43 | 4.3e-40 | 122.8 | In-house | 1-146 (307) | Show / Hide |
Range on Protein: 300-445 Range on HMM: 1-146/307 Sequence Identity: 43% (64 aa) VAVKVRHPGVTEVIRRDFILINWVVKACSHFSGLRYLRLEDSVQQFAVFMLTQVDLAREAAHLSRFLYNFRSWKDVSFPKPLYPLVHPAVLVETYERGES ||||| |||. . | .|. . |...| | . | | | |.|| || | | ||| | | || || | | ||||||| VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKWLSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYEESVP VSRFVDSPKRSHINSALAHIGTHTLLKMLLVDNFIHADLHPGNILV || . . .| .| ||||. ||||.||||||||||| VSSYQQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILV |
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ABC1 | ABC1-C-1.AA | ABC1 | 259-381 | 36 | 4.8e-38 | 130.2 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 259-381 Range on HMM: 1-126/126 Sequence Identity: 36% (47 aa) GAFGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKACSHFSGL---RYLRLEDSVQQFAVFMLTQVDL ..|. .||.|. |.|||.|..| ||||||.|. . .||||| |||| . ..||. .. |..|. |. ....|. |..|. . .|. EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDD---GEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDY AREAAHLSRFLYNFRSW---KDVSFPKPL |||.. .|| .||| | ..| || RREAKNMERFRENFRHWHRQPWVYVPKVY |
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Kinase | ABC1-C-1.AA | ABC1 | 261-381 | 34 | 1.1e-24 | 88.33 | In-house | 3-123 (123) | Show / Hide |
Range on Protein: 261-381 Range on HMM: 3-123/123 Sequence Identity: 34% (43 aa) FGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKACSHFSG---LRYLRLEDSVQQFAVFMLTQVDLAR | .|. |. |.|.|.|. | ||||||.|.. | |||||| |||| | |. | .. |||.|. | . . ..|.. |. | . . |. . LG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQ---TVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNN EAAHLSRFLYNFR--SWKDVSFPKPL ||. . .. .|. |... .|... EARNAEKCRQLFKKFHWPFFYVPRIH |
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Kinase | ABC1-C-1.AA | ABC1-B | 259-327 | 40 | 3e-19 | 66.99 | In-house | 1-64 (125) | Show / Hide |
Range on Protein: 259-327 Range on HMM: 1-64/125 Sequence Identity: 40% (28 aa) GAFGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKAC | ||. |. |...|.|. | ||||||.| . | |||||| || . . .. | .. .||.| KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GE---TVAVKVQHPWLRKQFHYDMMMMELFVKVC |
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Kinase | ABC1-C-1.AA | ABC1-A | 272-313 | 52 | 6.7e-10 | 30.67 | In-house | 1-38 (216) | Show / Hide |
Range on Protein: 272-313 Range on HMM: 1-38/216 Sequence Identity: 52% (22 aa) FEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVI ||| | | | |||.|||.. |.. ||||. ||| | | FEEMPFACASIGQVHQAVLKD-GRE---VAVKIQYPGVAESI |
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Kinase | ABC1-C-1.AA | CAMK | 276-304 | 23 | 0.000616 | 7.78 | In-house | 1-38 (425) | Show / Hide |
Range on Protein: 276-304 Range on HMM: 1-38/425 Sequence Identity: 23% (9 aa) PLASGSVAQVHRAVLR-GQGKK--------PVTVAVKV | .|| ..|.... . .||. .. ||.|. TLGRGSFGKVKLCIHKNTTGKERVHHIYTNGQKVAIKI |
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Kinase | ABC1-C-1.AA | Worm5 | 433-445 | 53 | 0.000636 | 7.78 | In-house | 127-139 (260) | Show / Hide |
Range on Protein: 433-445 Range on HMM: 127-139/260 Sequence Identity: 53% (7 aa) FIHADLHPGNILV |||.|.| .||.. FIHRDCHWQNIMF |
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Kinase | ABC1-C-1.AA | ABC1-C | 465-588 | 29 | 3.4e-10 | 27.57 | In-house | 182-307 (307) | Show / Hide |
Range on Protein: 465-588 Range on HMM: 182-307/307 Sequence Identity: 29% (37 aa) LVFLDVGMTAELSNKDRRTLLEFFKGIAMRDGRKTAECALQFSELQTCPDPKGFVREVEDCFKD--WNAMDSAVLHTGDCIQELLERVRRHKVNIDGDVC || || |. ||| | | | . | | . || | | | || |. | . || . . ||| .. LVLLDAGIVAELQAPDLRNFRAVFMAVVMGQGQRVAELILHHARASECRDVEGFKTEMAMLVTQARKNTITLEKLHVSSLLSSVFKLLMTHKVKLESNFA TVIVTTLVLEGWQRKLDPEYNIMETL .. .|||| | ||| |.| SIVFAIMVLEGLGRSLDPKLDILEAA |