Gene ABC1-B-p1_c (S.moellendorffii)

ABC1-B-p1_c

Species: S.moellendorffii
Alias: ABC1-B-p1_c
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B-plant1

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B-p1_c.AA Protein None 492 None Fasta, JSON
ABC1-B-p1_c.NA RNA None 1479 None Fasta, JSON

Protein domain

Protein domains of ABC1-B-p1_c.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-B-p1_c.AA ABC1 145-237 40 2.4e-23 80.77 Pfam 1-100 (126) Show / Hide 
Range on Protein: 145-237
Range on HMM: 1-100/126
Sequence Identity: 40% (40 aa)

KDIVTPLDALFSNVEEDPIAAASIAQVHGATLID-GTPVVVKVQHLGMDTIMHSDLRNLARVARFLKGQLPV------DLTPIVKEIQATIPLEFNFERE
..  .|.. .|.  .| ||||||||||| |.| | |  |.||||| |..  | .|..|. ..|. .|   |       ||. ||.|.. ..| | ...||
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE
Kinase ABC1-B-p1_c.AA ABC1 145-238 38 2.4e-22 80.54 In-house 1-99 (123) Show / Hide 
Range on Protein: 145-238
Range on HMM: 1-99/123
Sequence Identity: 38% (38 aa)

KDIVTPLDALFSNVEEDPIAAASIAQVHGATLIDGTPVVVKVQHLGMDTIMHSDLRNLARVARFLKGQLP------VDLTPIVKEIQATIPLEFNFEREV
.|.  . .  ||  .| |.||||||||| | |.||. |.||||| |  .  |.|. |. .| . ..   |        |...| |.| ..|.| .|..|.
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA
Kinase ABC1-B-p1_c.AA ABC1-B 145-238 33 2.2e-16 56.57 In-house 1-100 (125) Show / Hide 
Range on Protein: 145-238
Range on HMM: 1-100/125
Sequence Identity: 33% (34 aa)

KDIVTPLDALFSNVEEDPIAAASIAQVHGATLIDGTPVVVKVQHLGMDTIMHSDLRNLARVARFLKGQLP-------VDLTPIVKEIQATIPLEFNFERE
||.  . .  ||  .. ||||||.|||| | | ||. | |||||    .  | |.  .  . . ..  .|         ... . ||| ..| | .|. |
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE

V
.
A
Kinase ABC1-B-p1_c.AA ABC1-A 158-205 50 1.1e-14 47.35 In-house 1-48 (216) Show / Hide 
Range on Protein: 158-205
Range on HMM: 1-48/216
Sequence Identity: 50% (24 aa)

VEEDPIAAASIAQVHGATLIDGTPVVVKVQHLGMDTIMHSDLRNLARV
 || | |.||| ||| | |.||. |.||.|  |      ||. || .|
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAESIDSDINNLMMV
Kinase ABC1-B-p1_c.AA ABC1-A 281-299 42 0.182808 1.17 In-house 104-122 (216) Show / Hide 
Range on Protein: 281-299
Range on HMM: 104-122/216
Sequence Identity: 42% (8 aa)

IENLCTQRLIVMERLHGTP
|  .|| | . ||.  |.|
IDEYCTDRVLTMELMYGFP
Kinase ABC1-B-p1_c.AA CDK-DD1 338-383 39 0.000497 7.66 In-house 118-163 (379) Show / Hide 
Range on Protein: 338-383
Range on HMM: 118-163/379
Sequence Identity: 39% (18 aa)

GIFHADPHAGNLLLLTDGRLGLLDFGQSKVLGEESRKQFARMVISL
|| | |  . |||  . | | . ||| .   .  | | |.  |.||
GIMHRDIKPANLLINNRGDLKITDFGFTTYYTKRSEKHFSHQVVSL