Gene ABC1-A (S.moellendorffii)

ABC1-A

Species: S.moellendorffii
Alias: ABC1-A
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-A

Sequence

Name Sequence Type Origin Length Description Download
ABC1-A.AA Protein None 461 None Fasta, JSON
ABC1-A.NA RNA None 1383 None Fasta, JSON

Protein domain

Protein domains of ABC1-A.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-A.AA ABC1 125-151 59 4.3e-09 32.86 Pfam 1-27 (126) Show / Hide 
Range on Protein: 125-151
Range on HMM: 1-27/126
Sequence Identity: 59% (16 aa)

AELGPEWRERLQIFDDQPMAAASIGQV
.|||  |.|. | ||..|.|||||.||
EELGCPWEEIFQEFDEEPIAAASIAQV
Kinase ABC1-A.AA ABC1 125-151 48 1.1e-07 27.21 In-house 1-26 (123) Show / Hide 
Range on Protein: 125-151
Range on HMM: 1-26/123
Sequence Identity: 48% (13 aa)

AELGPEWRERLQIFDDQPMAAASIGQV
 .||  | .  . ||..|.|||||.||
QDLG-NWEDVFSEFDEKPFAAASIAQV
Kinase ABC1-A.AA ABC1-A 138-151 64 2.6e-07 21.65 In-house 1-14 (216) Show / Hide 
Range on Protein: 138-151
Range on HMM: 1-14/216
Sequence Identity: 64% (9 aa)

FDDQPMAAASIGQV
| . |.|.||||||
FEEMPFACASIGQV
Kinase ABC1-A.AA ABC1-B 138-151 64 0.005944 7.73 In-house 13-26 (125) Show / Hide 
Range on Protein: 138-151
Range on HMM: 13-26/125
Sequence Identity: 64% (9 aa)

FDDQPMAAASIGQV
||..| ||||. ||
FDQKPIAAASLAQV
Kinase ABC1-A.AA ABC1-A 166-288 47 1.2e-55 190.66 In-house 13-135 (216) Show / Hide 
Range on Protein: 166-288
Range on HMM: 13-135/216
Sequence Identity: 47% (58 aa)

QVHRATLKGGQLAVMKIQYPGVAKSIDSDIDNVKWLLERTNLLPRGLYLDQAIKVAKSELALECDYYVEAASQKKFKELLAGEQEFYVPVVYDELSSKRV
|||.| ||.|.  ..|||||||| ||||||.|   ..  ....| |. ||. | .|. ||..||||  ||. ..||..||.. . |||| | ||... ||
QVHQAVLKDGREVAVKIQYPGVAESIDSDINNLMMVMNMSGMFPKGMFLDHFIDYARRELHWECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRV

LTTEFVPGVSIDKVATMEQSVRN
||.| . |. ||.     | .||
LTMELMYGFPIDQCQGLSQEIRN
Kinase ABC1-A.AA ABC1 166-257 33 2.2e-32 113.94 In-house 25-123 (123) Show / Hide 
Range on Protein: 166-257
Range on HMM: 25-123/123
Sequence Identity: 33% (33 aa)

QVHRATLKGGQLAVMKIQYPGVAKSIDSDIDNVKWLLERTNLLPRG-----LYLDQAIKVAKSELALECDYYVEAASQKKFKELLA--GEQEFYVPVVY
||||| ||.||  ..|.|.|||...|..||.| . ... ..... |     . |.. . ....||..|||.. ||. ..|...|..  . ..|||| ..
QVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-A.AA ABC1 166-257 32 4e-32 110.28 Pfam 26-126 (126) Show / Hide 
Range on Protein: 166-257
Range on HMM: 26-126/126
Sequence Identity: 32% (33 aa)

QVHRATLKG-GQLAVMKIQYPGVAKSIDSDIDNVKWLLERTNLLPRG-----LYLDQAIKVAKSELALECDYYVEAASQKKFKELLAGE---QEFYVPVV
|||||.||  |.  ..|.|.|||.|....||.|..|... ..... |     . |.. .......|. |.||  ||.....|.|....    ...||| |
QVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRREAKNMERFRENFRHWHRQPWVYVPKV

Y
|
Y
Kinase ABC1-A.AA ABC1-B 166-195 40 9.7e-05 14.23 In-house 25-54 (125) Show / Hide 
Range on Protein: 166-195
Range on HMM: 25-54/125
Sequence Identity: 40% (12 aa)

QVHRATLKGGQLAVMKIQYPGVAKSIDSDI
||||| |..|.    |.|.| . |... |.
QVHRAKLHDGETVAVKVQHPWLRKQFHYDM
Kinase ABC1-A.AA ABC1-B 221-257 25 0.092302 3.4 In-house 86-125 (125) Show / Hide 
Range on Protein: 221-257
Range on HMM: 86-125/125
Sequence Identity: 25% (10 aa)

AKSELALECDYYVEAASQKKFKELLA---GEQEFYVPVVY
... |. | | | ||   .| .....   .  . ||| ..
IQKNLPQELDFYNEARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-A.AA ABC1-A 290-330 46 2.9e-19 63.44 In-house 172-216 (216) Show / Hide 
Range on Protein: 290-330
Range on HMM: 172-216/216
Sequence Identity: 46% (21 aa)

TDPNWSNFLYDEG----SKRINLIDFGAARHYPKRFVDDYLQMVI
|||||.||.||      .... | |||| | | | |.| | | . 
TDPNWANFFYDKHPKTGQHKVELLDFGASREYGKDFTDHYMQIIK