Gene FAM20C (Mouse)

FAM20C

Species: Mouse
Alias: FAM20C
External Links:
Annotation:

Classification

Group: PKL
Family: FJ

Sequence

Name Sequence Type Origin Length Description Download
FAM20C.AA Protein None 579 None Fasta, JSON
FAM20C.NA RNA None 3001 None Fasta, JSON
FAM20C.kin_dom Protein Kinase Domain None 296 None Fasta, JSON

Protein domain

Protein domains of FAM20C.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
FJ_kinase FAM20C.AA FJ_kinase 260-555 46 1.8e-183 615.79 In-house 1-351 (351) Show / Hide 
Range on Protein: 260-555
Range on HMM: 1-351/351
Sequence Identity: 46% (163 aa)

SGGTQLKLIMTFQNYGQALFKPMKQTREQETPPDFFYFSDYERHNAEIAAFHLDRILDFRR--VPPVAGRMINMTKEIRDVTRDKKLWRTFFVSPA-NNI
..|||||...||..  .|.||||...|.||.....||...|.|||.|||||||||||.||.  .|||.||..|||.|.. |..|..|..|||.||| ||.
GCGTQLKRMFTFADGQRACFKPMWYPRDQEHVINHFYYQNYDRHNGEIAAFHLDRILNFRWNLAPPVVGRVVNMTTEWYPVATDQELQKTFFISPAKNNT

CFYGECSYYCSTEHALCGRP-DQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKR-KKAEWEVD-----------------PDYCEEVKQTPP-------Y
||||.|..||.|||. |... ...|||..|.||......|| ||.||.|.|||| ||||||.|                 ..||.||||.||       |
CFYGKCHWYCDTEHVVCTDWENLMEGSITAWLPQEPFWPRKKWRHPWQRTYHKRHKKAEWETDQIRVRHGLLKRLGAAHQMNYCKEVKQKPPSPSPEEVY

DSGHRILDIMDMTVFDFLMGNMDRHHYETFEKFGN----------------ETFIIHLDNGRGFGKY----SHDELSILAPLHQCCRIRRSTYLRLQLLA
|.|.|.||..|| |||.|.|||||||||||....|                |....||||..|||..    .|.||..|||| |||..||||. ||| ..
DHGRRLLDWIDMIVFDYLIGNMDRHHYETFNFQWNARIMERPTHNLHRQPDEGMLVHLDNEKGFGHPYRVLFHWELYHLAPLYQCCMFRRSTWQRLQEFH

KEE------HKLSLLMAESLQHDKVAPVLYQLHLEALDRRLRIVLQAVRDC
...       .|. || ||...| ..|||.. |..||.||...|...|..|
NGPDVGRRLRRLFELMRESMPRDPLHPVLWDKHYKALQRRIDRVYKHVHHC
DUF1193 FAM20C.AA DUF1193 348-568 66 4.1e-169 572.92 Pfam 1-234 (234) Show / Hide 
Range on Protein: 348-568
Range on HMM: 1-234/234
Sequence Identity: 66% (155 aa)

FFVSPANNICFYGECSYYCSTEHALCG--RPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHKRKKAEWEVDPDYCEE-VKQTPPYDSGHRILDIMDMTV
||.|||||.||||.|||||.||||.||  .||..||||.|.||||||..||.||.||.|.||||||||||.||.||.. |||.||||.|.|.|||.||..
FFCSPANNTCFYGKCSYYCKTEHAVCGDQNPDMMEGSLTAWLPDLSLWPRKKWRHPWQRTYHKRKKAEWETDPNYCDTYVKQMPPYDHGTRLLDIIDMAI

FDFLMG-------NMDRHHYETFEKFGNETFIIHLDNGRGFGKYSHDELSILAPLHQCCRIRRSTYLRLQLLAKEEHKLSLLMAESLQHD---KVAPVLY
||||.|       ||||||||||||||||||.||||||||||..|||||||||||.|||.|||||.|||||.......|| .|.|||.||   .|.|||.
FDFLIGRFFSVGHNMDRHHYETFEKFGNETFLIHLDNGRGFGNHSHDELSILAPLYQCCMIRRSTWLRLQLFSNPGYRLSEVMRESLSHDPLHPVHPVLT

QLHLEALDRRLRIVLQAVRDCVEKDGLSSVVEDD
. |.||.||||.||.|.|..|.|..|...|...|
EPHYEAMDRRLQIVMQTVEQCIEQHGRDDVIVED