Gene Col4A3BP (Mouse)
Col4A3BP
Species: Mouse
Alias: Col4A3BP
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| Col4A3BP.AA | Protein | None | 624 | None | Fasta, JSON |
| Col4A3BP.NA | RNA | None | 5363 | None | Fasta, JSON |
Protein domains of Col4A3BP.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.
| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| PH | Col4A3BP.AA | PH | 24-119 | 29 | 1.3e-23 | 85.66 | SMART | 1-82 (82) | Show / Hide |
Range on Protein: 24-119 Range on HMM: 1-82/82 Sequence Identity: 29% (28 aa) VERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPEHRQQWVDAIEQHKTES |...| |.|.. .|..||.||.|..|.|||.. ..||| ||.. ... . | |. | ..|... ..|..|.|..||... .. VIKEGWLYKKS--K-RWKKRWFVLFNDCLYYYKDK-----KPKGSIPLSDCTVRE-P----CFEIHH-DRTYYFQCESEEEMQEWMQAIQKAIHNN |
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| PH | Col4A3BP.AA | PH | 24-117 | 31 | 7.5e-23 | 85.05 | Pfam | 1-92 (92) | Show / Hide |
Range on Protein: 24-117 Range on HMM: 1-92/92 Sequence Identity: 31% (31 aa) VERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEYGCRGSICLSKAVITPHDF--DECRFDISVNDS-VWYLRAQDPEHRQQWVDAIEQHKT |...| |.|.. .. .|..||.||.||.|.|||... | ..||| ||.. .|... ... | |. | ..|..| ..|....|..||... VIKEGWLHKKG-KRKSWKKRWFVLFNNCLYYYKDDK---YRPKGSIPLSDCQVTKVPDNKRPHCFQIRT-DRRTYYFQAESEEEMNDWMQAIQSACR |
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| START | Col4A3BP.AA | START | 398-619 | 14 | 4.8e-22 | 80.47 | SMART | 1-248 (248) | Show / Hide |
Range on Protein: 398-619 Range on HMM: 1-248/248 Sequence Identity: 14% (38 aa) EEMVQNHMNYSLQDVGGDANWQLVV----EEGEMKVYRREVEENG------IVLDPLKATHAVKGVTGHEVCNYFWNVDV-RNDWETTIE----NFHVVE | .. . . .. ....| |.. .| .|........ ....| ..| .. .. .... |. | .... . ||| EYWCECCCEFVQMACEDYKGWVLMYETREIENYMEYRYIWEDGCNCMQGLRFHGYMMRAWGVVPMCCAFDLVEEVMMDMEYRMEWDCNFCCMVSFAEVVE TLADN------AIIVYQTHKRVW--PASQ-RDVLYLSAIRKIPALTE-NDPETWIVCNFSVDHDSAPL---NNRCVRAKINIAMIC-QTLVSPPEGDQEI .. .. ..|....|.... | . ||.... .|. .. . |..| ||.|.. | . ..||... . ..| ... ... VICPGHGPNRNTVIYHWVHNMMMPMPMWPTRDFVFVRYWRRDCDH-RFDRDGSWVICCRSVTHPQHPPTGPHSGYVRCHHYPSGCCIWPCGNGHTK---- SRDNILCKITYVANVNPGGWAP--ASVLRAVAKREYPKFLKR--FTSYVQEKTAG | ||.|.. .....|| | ..|.. ......|.|. .. ..|. .. --DDNRCKVTWICHADLKGWLPFVHWYIRWFMHHCMAEFWKHRDWMATLQKWCWK |
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| START | Col4A3BP.AA | START | 398-619 | 14 | 3.7e-20 | 75.87 | Pfam | 1-236 (236) | Show / Hide |
Range on Protein: 398-619
Range on HMM: 1-236/236
Sequence Identity: 14% (35 aa)
EEMVQNHMNYSLQDVGGDANWQLVV-----EEGEMKVYRREVEENG----IVLDPLKATHAVKGVTGHEVCNYFWNVD-VRNDWETTIE----NFHVVET
| . . . .. .....| ... .| ....|..... .. ....| ..| .. . . .... . | .... ....
EVWEEAMQEFVKMACSDEPGWVKMPETGRDMENYDEYYQKFEPSQVTKPGCHGEMSRAWGVVPMCHAFDLVEEVMHDMEYMMQWDQMFRCMVSRAETIQH
LADN------AIIVYQTHKRVW--PASQ-RDVLYLSAIRKIPALTEN-DPETWIVCNFSVDHDSAPL--NNRCVRAKINIAMICQTLVSPP-EGDQEISR
. .. ..|... .. .| | . ||..... .|.. . ..|..| ||||.. | . .||.. ....| . .. . .
ICPGNGGNYNGDIQHMVAEMQWPTPHVPTRDFVFVRYWRQV----CDHRDGDWVICDRSVDHPQCPPEGHKGYVRCHHLPSGCCIWPCGNGHT-------
DNILCKITYVANVNPGGWAP-ASVLRAVAKREYPKFLKRFTSYVQEKTAG
||.|.| .....|| | .|.| . ......|.|.... .|. ..
---KCKVTWVCHWDLKGWLPVHWVYRWLYHSCMAFFWKHWVATLQRHCER
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