Gene n1198 (Tetrahymena)

n1198

Species: Tetrahymena
Alias: 1198, n60.m00377, n1198
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-A8

Sequence

Name Sequence Type Origin Length Description Download
n1198.AA Protein None 330 None Fasta, JSON
n1198.NA RNA None 990 None Fasta, JSON

Protein domain

Protein domains of n1198.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1198.AA Ciliate-A8 32-191 40 2e-38 130.25 In-house 1-151 (151) Show / Hide 
Range on Protein: 32-191
Range on HMM: 1-151/151
Sequence Identity: 40% (66 aa)

YEYQKLIKYEDQYYTVVAFSHQLQCPVAIKLIKILNMDNNFIFQELNQRIEGLLKLDNEIFIQQIIEKIQDEQIGLITVVTELYSC---NNNHILIYTYV
|.|||..   |  | |.| |  .|| |||| || .|  | . ..|..  |. . |..||. | ||||.|||...|.|..|||...|   .          
YKYQKVLEKGDFSYVVQAYSINHQCQVAIKIIKYMNQQNKINDKEFEKCIQAMQKIKNEKYILQIIECIQDKEQGFIAIVTEFCDCFDFYK---------

YNYNILGNLETILK--INAFKYDQIVALTYQLLNNLLTIQNNNLTYVRGINPNNVFYSKSTNQFL
     ..||..||.  .|.|  .||||||||||. ||  |... ..   |.|.| .||.| |||.
----KKENLASILENNLNKFTFEQIVALTYQLLKCLLVFQEKGIIH-CDIKPQNILYSWSKNQFI
Kinase n1198.AA S_TKc 32-290 15 0.000596 -118.97 SMART 1-231 (231) Show / Hide 
Range on Protein: 32-290
Range on HMM: 1-231/231
Sequence Identity: 15% (45 aa)

YEYQKLIKYEDQYYTVVAFSHQLQCPVAIKLIKILNMDNNFIFQELNQRIEGLLKLDNEIFIQQIIEKIQDEQIGLITVVTELYSCNNNHILIYTYVYNY
||  ..|          .  .  .  |||| ||      . | .|..     .||  .  .| .... .||   . . .|.|. . .             
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK------EHIRREIQ-----ILKK-HHPNIVKLYDVFQD---DHLYMVMEYCDGD-------------

NILGNLETILKINA-------FKYDQIVALTYQLLNNLLTIQNNNLTYVRGINPNNVFYSKSTNQFLI-----GSCKLYQINQIRTNIVI--------QL
  ||.| ...| .        |   ..  ..||... |  . ...  . | . | |.. ..      |     |.....      | ..          |
--LGDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSHGIIH-RDLKPENILLDE-----HIKICDFGLARQL------TTFCGTPWYMAPEVL

NQENLF------SIGLIIIQALIKRKLSSNESIRLKDQGLFQVIPFLEYSFDSEFINNILCIMLEQKQNTRIQLQALLQ-----NLQKFN
     .      |.| |..  |  . . .       .| .|..|       ..|... ... .|.   . |.    .||     ..  . 
--GYGKCKCDWWSCGCILYEMLCGYPPFP------QMQMMFKKIG------SPEAKD-FIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF