Gene n787 (Tetrahymena)

n787

Species: Tetrahymena
Alias: 246.m00024, 787, n787
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-D1

Sequence

Name Sequence Type Origin Length Description Download
n787.AA Protein None 765 None Fasta, JSON
n787.NA RNA None 2298 None Fasta, JSON

Protein domain

Protein domains of n787.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
S_TKc n787.AA S_TKc 42-310 13 5e-06 -88.97 SMART 16-231 (231) Show / Hide 
Range on Protein: 42-310
Range on HMM: 16-231/231
Sequence Identity: 13% (38 aa)

YECVDKKSKKDYIMKNIKRQYDKTLAENLCKQLFDMYNLYEKMQYKTNLGFIAGFDIVNDGNEFYIRIIMEKCVG---TLKTFLQLGNR------IKPDQ
| |..||... . .| ||            ...    .. .|         .  .|.  |    .. ..|| | |   .|.....  .|      . . .
YKCRHKKTGRIVAIKIIK------------EHIRREIQILKK----HHPNIVKLYDVFQD---DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-H

FIEQFKSMVTTMFELEGRNVSHKNLTLNNIFYIFNQEGRVEFKL--FGFSNLVWGANDGNLSYVSPEEKYLMNTFEGSALSTPYDMDYFKVDSFNLGITF
    .. ..  .  .  ... |  |   ||.         . |.  ||.. ..     | . |..||                   ...|.|   .|...
ARFYMYQICCALEYCHSHGIIHRDLKPENILLDE------HIKICDFGLARQL-TTFCGTPWYMAPEVL---------------GYGKCKCDWWSCGCIL

LELIF----LKEVSKWNFSLDVIGDPKMLDIYQNQDKLNSMIHENISYLKGHEFLFSLLKNMIHVNPRKRDRFTKIIY-----QMHENL
 |..            .  ...||                           .|..  ..... ...|.||    ..        .|. .
YEMLCGYPPFP---QMQMMFKKIG--------------------------SPEAKD-FIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF