Gene n712 (Tetrahymena)

n712

Species: Tetrahymena
Alias: 3671.m00004, n712, 712
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-Unique

Sequence

Name Sequence Type Origin Length Description Download
n712.AA Protein None 779 None Fasta, JSON
n712.NA RNA None 2340 None Fasta, JSON

Protein domain

Protein domains of n712.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

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Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
IF-2B n712.AA IF-2B 46-357 32 5.9e-87 299.99 Pfam 1-346 (346) Show / Hide 
Range on Protein: 46-357
Range on HMM: 1-346/346
Sequence Identity: 32% (116 aa)

NVRGAPLIAVVATQGLRNELFNRDFKSVEEL---------RKYVLQAVEYLRTSRPTAVNLQNDTERVRQ----TVIDFSLQQSVEEISQL---------
 |||.| |...| .||. .. ....  |.||         . .  ||.|.|. .||||||. .  .|. .     .   . . .||| ...         
QVRGSPAICIAAAEGLMEFIQDYQWPNVTELYTAERWRDDWEHIRQAIEFLCKTRPTAVNMFWAIDRFMRFIRDEILAMHSYEDVEECKESEHKISTMFN

---------QQLKQQLFQLIDSFNQQ-YIDACRQMSILGVDAIIKDFEEKHPEQAGQNAKLKVLTICNTGKLATPGDGTALGIVRE-LHRRGRLERLYIA
         ||..  | . .|.| .   . ||. ..  . . |            .   .. ..|.||.| ||| . ||.||..|. ... |.  . | .
LSQDFEFHHQQRQNNLIERADEFINEKIEEACQKIGQIAAEHI-----------FPDHDGDTIMTHCNSGTLATSDWGTVLGVIRHAAWKEGKRFHVYVT

ETRPYNQGARLTASEAVLDKLPATLITDSMAGFLMQQGNIDFVVAGADRVAKNGDTANKIGTYTFAVLAKHHDVNFYVALPTQTIDENTLCGADIHIEQR
||||.||||||.| | . .  | |||||||.|..||.. .| |. ||||...||...||||||. ||.||||...|||. |. ..|... ...|| || |
ETRPRNQGARLMAWELMQHGIPVTLITDSMVGYVMQEWMVDKVIVGADRILRNGCIYNKIGTYQLAVCAKHHNIPFYVCCPMYKFDPRFPWDEDIFIEER

PKNELTHVMGVQIAPT------------EIEVWNPSFDVTPSSLIKRIFHEGGEYEC
. .|.. ..|..|||             ....||| ||.|| ..|  |. | |  ..
DPQEVYYRTGDRIAPQNGQLLANWQSHPNVKCWNPAFDYTPPEYITAIITEVGVMPP
APH n712.AA APH 551-622 20 8.2e-07 24.12 Pfam 136-210 (248) Show / Hide 
Range on Protein: 551-622
Range on HMM: 136-210/248
Sequence Identity: 20% (16 aa)

KWTTPQLDDIVKT---IKIADDELIVAISELRHKFITSKEALIHGDLHTGSIMVT--ENETR---VIDPEFAFYGPIGFD
.|. ...|  ..    .  ....|. .. ....      ....|||.| | .|..  ....|   ||| ..| .|.. .|
DWCRCWVDPEWFDEDRQWWLWQRLWAWLEAHWP-----PPCWCHGDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYD