Gene n573 (Tetrahymena)

n573

Species: Tetrahymena
Alias: 573, n573, 3694.m00198
External Links:
Annotation:

Classification

Group: Atypical
Family: CAK

Sequence

Name Sequence Type Origin Length Description Download
n573.AA Protein None 385 None Fasta, JSON
n573.NA RNA None 1158 None Fasta, JSON

Protein domain

Protein domains of n573.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Choline_kinase n573.AA Choline_kinase 71-272 27 3.1e-35 128.19 Pfam 19-225 (225) Show / Hide 
Range on Protein: 71-272
Range on HMM: 19-225/225
Sequence Identity: 27% (59 aa)

DREREKKVAKMLESQKYGPKVYYADNKIRVE--EFW-PFDHVQVEEMTQPQKMNQIAHLFAFFHSNKILKEEEASAKFVN-HLQRKQVLEAVQNS--IQN
|||.| .. . |   ..|||.|. ... |||  ||  . .  . |.. .|    .||.  . ||. ....        .. . . .....  ..   ..|
DRETEIVNFECLSEHGLGPKLYGFFPNGRVEVTEFIEHSRTLSCEDIRDPEISKKIAKRMREFHDIDMCH--------PHPWKKMPWCWDMMRKWFNLGN

SDLQLQEQKEELLKMVDFIFSTQMIDYIL---QSMDKAKTP---LVFCHNDTNSTNLLF--DNENKRIYFLDYEYAGYNYRAFEFGNFFNEQLWDYEVKE
 ..|.... .   |....|.  .. . |    .  .. . |   .||||||. . |...  |||.....| |.|||.||||||...|.|.|   ||.  |
QEAQWHFE-VNKRKHMKCINWYWLEKEINWLEKWLENFHSPGLWIVFCHNDLQYGNIMYIEDNETNCLMFIDWEYASYNYRAFDIANHFCEWMYDYHWPE

PPFFALKKELYPSDSQ
|||. .  ..||.  |
PPFHKCDYSKYPNREQ
APH n573.AA APH 189-277 14 4.7e-07 24.94 Pfam 160-248 (248) Show / Hide 
Range on Protein: 189-277
Range on HMM: 160-248/248
Sequence Identity: 14% (14 aa)

IDYILQSMDKAKTPLVFCHNDTNSTNLLFD--NENKRI-YFLDYEYAGYNYRAFEFGNFFNEQLWDYEVKEPPFFALKKELYP---SDSQRYSFF
...... ..    |...||.| .. |...|   .. |. ...| ..|..  ...... ..    | ..   | . .   . |     | .|. ..
WAWLEAHWP----PPCWCHGDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYDLAMCW--WHWWCRWFWPEWRDAYGRAYCRHDPDWHRMRWW