Gene n156 (Tetrahymena)

n156

Species: Tetrahymena
Alias: 3827.m00883, n156, 156
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-E1

Sequence

Name Sequence Type Origin Length Description Download
n156.AA Protein None 633 None Fasta, JSON
n156.NA RNA None 1902 None Fasta, JSON

Protein domain

Protein domains of n156.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n156.AA Ciliate-B2 50-177 21 2.4e-09 18.02 In-house 14-145 (197) Show / Hide 
Range on Protein: 50-177
Range on HMM: 14-145/197
Sequence Identity: 21% (29 aa)

LLLRGTKTHL-EQNQQVCIKISYS-DASSYEIVKQEASILKDLLIFKSVVQFVDEFDFEDQSLFILITESYEKFVQSEIDVAQKYN---DELALVNVYYR
.   | | |  .. | . .|| .  . .  |.. .| .|.| . .   ||...| .  . ..  .||.|  |   ..|..  ||      .  |... . 
FICEGYKKHSIREYQDLAFKIYFNKQDCDKEEIQHEIKIMKMFEYNINVVKYIDHIQIN-ETIDVLIMEKCECSLKQELQKIQKQQKCFNNQKLYQMIFQ

ILFSIFELHENNYFHGNINPNSIVVDGEGNYKF
 .    ... .|  |  |.|  | .  .|||..
LIDGLIQFRMYNILHLDIKPQNILFMQNGNYVY
Kinase n156.AA Ciliate-E1 43-250 16 8.4e-09 25.25 In-house 1-202 (202) Show / Hide 
Range on Protein: 43-250
Range on HMM: 1-202/202
Sequence Identity: 16% (36 aa)

IQHEEHFLLLRGTKTHL--EQNQQVCIKIS--YSDASSYEIVKQEASILKDLLIFKSVVQFVDEFDFEDQSLFILITESYEKFVQSEIDV----------
| .   .. ... . .   .| .|. |..   |.. . ... |.. .|.| .   ....|..| .. ..  ..|.|.|....  . ....          
IGNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMK-FKKECYIIQIIDYIKIDQNYICIIIFECCCCSLKDYLQNHNRLEYWQQC

--AQKYNDELALVNVYYRILFSIFELHENNYFHGNINPNSIVVDGEGNYKFINLVTKEYLFHNFNSDSQNISSNQEIQLEQIQQKKEFINSSLYISPEIK
   |.. ... ...  ..... . ||| .|  |..|.|  |... .|||..                   ..  . ....|.||....   . | .|| .
QQNQNQFTFQQKMQIIFQLIDGLIELHQYNIIHRDIKPQNILINNQGNYVYC-----------------DFGISKFLKNNQNQQCQYKGYTHYYYPPEQY

KIITKRKTNQIEEILQFLKQSDVY
....  . |. ..|    ..||.|
NCPEQ-EHNKNQKI---NYKSDIY
Kinase n156.AA Ciliate-E5 245-260 75 1.3e-07 20.68 In-house 256-271 (271) Show / Hide 
Range on Protein: 245-260
Range on HMM: 256-271/271
Sequence Identity: 75% (12 aa)

KQSDVYSLGLVFLTLL
||||.||||.||| | 
KQSDIYSLGIVFLELT
Kinase n156.AA S_TKc 49-318 13 5e-06 -88.42 SMART 1-231 (231) Show / Hide 
Range on Protein: 49-318
Range on HMM: 1-231/231
Sequence Identity: 13% (41 aa)

FLLLR------------GTKTHLEQNQQVCIKISYSDASSYEIVKQEASILKDLLIFKSVVQFVDEFDFEDQSLFILITESYEK---FVQSEIDVAQK--
. .||            .....   ...| |||        | ...| .|||     . .|.. | |.    . . ...|  .     . . |.  ..  
YEILRKIGKGAFGKVYKCRHKK--TGRIVAIKIIK------EHIRREIQILKK--HHPNIVKLYDVFQD---DHLYMVMEYCDGDLGDLFDYIKKRGRHG

---YNDELALVNVYYRILFSIFELHENNYFHGNINPNSIVVDGEGNYKFINL-VTKEYLFHNFNSDSQNISSNQEIQLEQIQQKKEFINSSLYISPEIKK
   . .|     . | |.  .  .|...  |  . |  | .|   . | .   . ...                          . |. .  |..||.  
LRFPFPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDE--HIKICDFGLARQL--------------------------TTFCGTPWYMAPEVL-

IITKRKTNQIEEILQFLK-QSDVYSLGLVFLTLLG----VQINKTTIKQIKHQCFDDILKVLPQNKIKLISFVRNFMLNYKPSLRATSFQLRK-------
              .. |  .|..|.| ..  .|      .    ..... ...              ...|.|. .|.. |. | |  .. .       
--------------GYGKCKCDWWSCGCILYEMLCGYPPFP----QMQMMFKKIG----------SPEAKDFIRK-CLQKDPEKRPTA-EALQDEWDIKC

-GLF
   |
HPWF
Kinase n156.AA Ciliate-B2 236-253 33 7e-06 9.74 In-house 174-197 (197) Show / Hide 
Range on Protein: 236-253
Range on HMM: 174-197/197
Sequence Identity: 33% (8 aa)

QIEEI------LQFLKQSDVYSLG
|.|..      ..   |||.||.|
QMECDHNQTFVTNIDFQSDIYSMG
Kinase n156.AA Ciliate-C3 145-180 36 0.000273 11.74 In-house 105-140 (140) Show / Hide 
Range on Protein: 145-180
Range on HMM: 105-140/140
Sequence Identity: 36% (13 aa)

ILFSIFELHENNYFHGNINPNSIVVDGEGNYKFINL
||  |  ||| |  || | .  |..  ... | |  
ILQAIDYLHEHNIVHGDIKFSNILINSKDEIKIIDF
Kinase n156.AA RAF 219-260 31 0.000358 9.09 In-house 172-215 (282) Show / Hide 
Range on Protein: 219-260
Range on HMM: 172-215/282
Sequence Identity: 31% (14 aa)

LYISPEIKK--IITKRKTNQIEEILQFLKQSDVYSLGLVFLTLL
|...||. .  .|  |    . . . .  |||||| | |.  |.
LWMAPEVIRNLMIDWRGDVLMQDENPYSFQSDVYSFGIVMYELM
Kinase n156.AA Ciliate-E3 247-260 57 0.000467 8.88 In-house 189-202 (202) Show / Hide 
Range on Protein: 247-260
Range on HMM: 189-202/202
Sequence Identity: 57% (8 aa)

SDVYSLGLVFLTLL
|| ||.| ||. | 
SDYYSVGAVFCQLC