Gene 25910 (M.brevicollis)

25910

Species: M.brevicollis
Alias: 25910
External Links:
Annotation:

Classification

Group: TK-assoc
Family: PTP
Subfamily: RPTP

Sequence

Name Sequence Type Origin Length Description Download
25910.AA Protein None 611 None Fasta, JSON

Protein domain

Protein domains of 25910.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
PTPc 25910.AA PTPc 238-495 23 1.2e-48 168.8 SMART 1-308 (308) Show / Hide 
Range on Protein: 238-495
Range on HMM: 1-308/308
Sequence Identity: 23% (74 aa)

SLQDDFRTLPLHLASS---------KSLGEHLLREL-----REP-RILPSVTTRIQLDRPPGA----KISGFINANAVRGFQGNPMRFIVTQAPLSGFES
.... | .|.               .    ..         | .  |..   ||. | .|||     . |..|||| ..|. ..| |.|.||.||     
GFWEEFERLQRMTPWDLMSNYDPCCSCTCACWPENREMDKNRYKCDIPCYDHTRVKLKPPPGESHCYEGSDYINANYIDGY-WRPKRYICTQGPL-----

GRVGTQVAFWSMVYQYQAPVVIMLIEPQP-----------HRCTRYWPVPDGNLRSGPFEVRHHGFDKHR-GFLVSSLSLTLRG----------KTHRFQ
   .|   || ||.|.. ....|| ..               | .|||     .  | ..|     .|.  .. .  ...|  |          .|.   
--PHTIEDFWRMVWQQKCHIIVMLCNCMEKCTENRDQNGREKCHQYWPDE--PMTYGHITVTCKSEEKCPDDYTMRTFEVTNTGCNCKYSMACSETRTVT

HICLSGWNEHGLPRSSKSVIALLRYLRNLKV---------------------RGPIVVHDDRGLGPSGVFVASDYCIDQAQAGKVDVMQAVYTLRQDRAA
|.   .| .|| | |..|.....|. |. .                      .||||||   | | .|.|.| |....| ..  ||. | | ..|. |. 
HYHYTNWPDHGVPESPDSFLDFIRQVRHWQSHSPNMYMNMVSSNSKYHHTCPTGPIVVHCSAGCGRTGTFCAIDIMCQQIEN--VDIFQIVKMMRNQRPG

LVESRAEYQYIHRLVLGYLD
.|.. . |....| .| |. 
MVQTEEQYIFCYRCILEYIK
Y_phosphatase 25910.AA Y_phosphatase 275-492 28 2.8e-47 167.44 Pfam 16-243 (243) Show / Hide 
Range on Protein: 275-492
Range on HMM: 16-243/243
Sequence Identity: 28% (68 aa)

TRIQLDRPPGAKISGFINANAVRGFQ-GNPMRFIVTQAPLSGFESGRVGTQVAFWSMVYQYQAPVVIMLIEPQP-HR----CTRYWPV--PDGNLRSGPF
||. | ..|| . | .|||| ..|   .|| ..|.||.|..        |   || ||.|.. ....|| ..    |    | .|||    .. .. |.|
TRVKLQPIPGDEDSDYINANYIDG-PYWNPKAYICTQGPMP-------HTIEDFWRMVWQQKCTCIVMLCNCMEMGRDEKTCHQYWPDNKEGQPMTYGDF

EVRHHGFDKHRGFLVSSLSLTLRG----KTHRFQHICLSGWNEHGLPRS-SKSVIALLRYLRNLKV---RG--PIVVHDDRGLGPSGVFVASDYCIDQAQ
.|     ... .. |  ...|  |    .|.. .|.   .| .|| | | .||.. ..|..|. .    .|  |||||   | | .|.|.| |....| .
QVTCVSEEHCPDYTVRTFEVTN-GDQKQETRTVTHYHYTNWPDHGVPESQPKSMLDFIRQVRKWQPNPDHGCPPIVVHCSAGCGRTGTFCAIDIMCQQME

AGKV-DVMQAVYTLRQDRAALVESRAEYQYIHRLVLG
.... |..|.| ..|. |. .|.. . |.......| 
HEGTVDIFQIVKHMRNQRPGMVQTEEQYIFCYQCILE
PTPc_motif 25910.AA PTPc_motif 394-492 28 2.6e-18 68.06 SMART 1-92 (92) Show / Hide 
Range on Protein: 394-492
Range on HMM: 1-92/92
Sequence Identity: 28% (30 aa)

RFQHICLSGWNEH-----GLPRSSKSVIALLRYLRNLKVRGPIVVHDDRGLGPSGVFVASDYCIDQAQAGKVDVMQAVYTLRQDRAALVESRAEYQYIHR
   |    .| .|     |.|   .|.. ..|..|.     |||||   | | .|.|.| |....|     ||. | |  .|. |. .|.. ..|....|
TVHHYHYTNWPDHVEKDSGVPE--DSILEFIRHVRK-----PIVVHCSAGCGRTGTFCAIDMMMQQ-----VDIFQTVKEMRKQRPGMVQTEEQYIFCYR

LVLG
 .| 
CILE