Gene F13C5.2 (Nematode worm)

F13C5.2

Species: Nematode worm
Alias: F13C5.2, aSWK466
External Links:
Annotation:

Classification

Group: Atypical
Family: BRD

Sequence

Name Sequence Type Origin Length Description Download
F13C5.2.AA Protein None 374 None Fasta, JSON

Protein domain

Protein domains of F13C5.2.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
BROMO F13C5.2.AA BROMO 115-224 38 4.5e-41 143.68 SMART 1-118 (118) Show / Hide 
Range on Protein: 115-224
Range on HMM: 1-118/118
Sequence Identity: 38% (46 aa)

LHDELKKCLSILKEFEKSTHDS---------FTFPFRKPVDVVLLGLTDYHEVIKKPMDMSTIRKKLIGEEYDTAVEFKEDFKLMINNCLTYNNEGDPVA
 .. .||| ..|||. .  ||.         .. ||..|||...|.. ||...||.|||..||.||| . .|... ||..||.|| ||| ||| .. .| 
DPK-QKKCQELLKEVMCHKHDHGDPMNRGRPYAWPFMQPVDRKELNYPDYYDIIKNPMDLKTIKKKLENHQYQSMEEFVDDFMLMFNNCMTYNEPDSEVY

DFALQFRKKFAAKWKKEFP
 .| . .|.| .||....|
KMAKKLQKFFEEKWREFPP
Bromodomain F13C5.2.AA Bromodomain 122-210 34 1.7e-28 95.35 Pfam 1-89 (89) Show / Hide 
Range on Protein: 122-210
Range on HMM: 1-89/89
Sequence Identity: 34% (32 aa)

CLSILK--EFEKSTHDSFTFPFRKPVDVVLLGLTDYHEVIKKPMDMSTIRKKLIGEEYD-TAVEFKEDFKLMINNCLTYNNEGDPVADFALQ
|. |..  .. .     .. ||..|||..  ...||...||.|||.|||..||   .|. .  ||..|..||..||.||| ...|..  | .
CDQIMDMKYIMEHP---ICEPFWHPVDPDRDEYPDYYDIIKHPMDLSTIQQKLKNNKYRNNIAEFWHDMELMWHNCMTYNGPDSPIYKDARK