Gene 6605 (Tetrahymena)

6605

Species: Tetrahymena
Alias: TTHERM_00193220, 16.m00261, 6605, PreTt06605, 1100
External Links: Tetrahymena Genome Database (TGD)
Annotation:

Classification

Group: Atypical
Family: TAF1

Sequence

Name Sequence Type Origin Length Description Download
6605.AA Protein None 1949 None Fasta, JSON
6605.NA RNA None 5850 None Fasta, JSON

Protein domain

Protein domains of 6605.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
DUF3591 6605.AA DUF3591 1369-1391 65 0.037082 8.49 Pfam 477-499 (494) Show / Hide 
Range on Protein: 1369-1391
Range on HMM: 477-499/494
Sequence Identity: 65% (15 aa)

VIMMEYIEEDPLVLQNIGMNSKI
|| ||| || |.|. |.|| |||
VILMEYCEEYPPVMSNFGMGSKI
DUF3591 6605.AA DUF3591 1510-1616 30 2e-17 64.37 Pfam 189-301 (494) Show / Hide 
Range on Protein: 1510-1616
Range on HMM: 189-301/494
Sequence Identity: 30% (34 aa)

LENHLFKAPIFKQRLPETDFLLVRQQE--NDKCNYYLRPIEYVYVVGQIEPSKSIYRPRSRDITPYMKNCMNTFIMIKIQ----KEKKVHFQDLLNNFSK
|.|... |||||.  ..||||..|...  ..  .||||.|. ...|||..|.  . .| ||..|   || .  ..   ..    ... .  .|..  |  
LYNNMYRAPIFKHKPEPTDFLCIRSTTPGGHGQKYYLRNIDHMFCVGQTFPVMEVPGPHSRKVTNMSKNRLKMIVYRLFWGQKSPRHRISIHDITKHFFP

NLTETQIRQQIKK
  .| |.||  |.
DQNEMQNRQRLKE
DUF3591 6605.AA DUF3591 1648-1746 33 5.251598 0.62 Pfam 336-431 (494) Show / Hide 
Range on Protein: 1648-1746
Range on HMM: 336-431/494
Sequence Identity: 33% (34 aa)

LTPEQACMFEKMLSHVYHLSNEIGLKELRTTEKLKNVLAKFQRDYPEDIKNYTIAKLITDKLSLTPWSLSNNFAH-DKQK--LYLEGLGDPTNGHG-GYS
.|||. |. | |   ..||    | ..   |.  |..  . | |  |. |.   . .| . ....|| .. ||    ..|  | | | |||| |.| |.|
ITPEDCCLYESMQVGQQHL-EDAGYNN---TDEFKRDYQQIQEDDDEETKK--VQMKIDLEQMMAPWNTTRNFINATQGKAMLQLHGEGDPT-GCGEGFS

FIK
||.
FIR