Gene 17200 (Tetrahymena)

17200

Species: Tetrahymena
Alias: 17200, PreTt17200, 276, TTHERM_01002800, 191.m00060, 3761.m00252
External Links: Tetrahymena Genome Database (TGD)
Annotation:

Classification

Group: Atypical
Family: HisK

Sequence

Name Sequence Type Origin Length Description Download
17200.AA Protein None 1284 None Fasta, JSON
17200.kin_dom Protein Kinase Domain None 114 None Fasta, JSON
17200.NA RNA None 3855 None Fasta, JSON

Protein domain

Protein domains of 17200.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
HisKA 17200.AA HisKA 513-589 27 1.1e-10 40.27 Pfam 1-69 (69) Show / Hide 
Range on Protein: 513-589
Range on HMM: 1-69/69
Sequence Identity: 27% (22 aa)

YKNRMLASVSHELRTPLNCSIQMLNMLFDKFNQHSSTYSNQEITEIN--QSLVKPALISNQLLINIINDILDYAQINAG
 |...||..||||||||.  . .. .| |           .. ..    . ... .. . | . ..|||.||...| ||
AKRQFLANMSHELRTPLTAIRGYAELLQD----------YTDLDPEQMRREYLETIQREAQRMQRLINDLLDFSRIEAG
HisKA 17200.AA HisKA 513-589 24 2e-09 38.54 SMART 1-89 (89) Show / Hide 
Range on Protein: 513-589
Range on HMM: 1-89/89
Sequence Identity: 24% (22 aa)

YKNRMLASVSHELRTPLNCSIQMLNMLFDKFN----QHSSTYSNQEITEIN--------QSLVKPALISNQLLINIINDILDYAQINAG
 |...||..||||||||.  . .. .| |...    .|... . ...            . ... .. . . . ..|||.||...| ||
AKRQFLANMSHELRTPLTAIRGYAELLQDWYYKQRYHHWTDLDPEQRLPMLRREFNCEYREYLETIQREADRMQRLINDLLDLSRIEAG
Kinase 17200.AA HisK 636-749 40 4.9e-64 219.06 In-house 1-164 (164) Show / Hide 
Range on Protein: 636-749
Range on HMM: 1-164/164
Sequence Identity: 40% (67 aa)

SDQNRIKQVLLNLLSNSLKFTDKG------YIEIRVTSLN--------------------------SNLIKIDVKDTGCGIPQDNLNKIFESFGNKQH--
||.|||||.|.||.||.||||.||      ||.| |.  |                          .|||.|.|.|||||.|.....|||. |||...  
SDPNRIKQILINLISNALKFTQKGGIPFQGYIKIKVEQINTQNNIKYNSIFIQKIQENMVQEQLQQKNLIQISVQDTGCGMPEEQQKKIFKMFGNIDDQH

----------SKFLNTQGAGLGLSVANNLAMGLG------GNRKIEVKSKVNEGTCFSFFILNR
          .|..|..|.||||...||||.|||      |||.|.|.|.|..|. |||.|.|.
QMIKKTFNHQNKKNNQHGCGLGLTICNNLAKGLGPEHNQNGNRGIQVQSEVGKGSTFSFYIYNN
Kinase 17200.AA HATPase_c 636-749 31 2.3e-28 100.95 Pfam 1-120 (120) Show / Hide 
Range on Protein: 636-749
Range on HMM: 1-120/120
Sequence Identity: 31% (39 aa)

SDQNRIKQVLLNLLSNSLKFTDK-GYIEIRVTSLNSNLIKIDVKDTGCGIPQ------DNLNKIFESFGNKQH-SKFLNTQG--AGLGLSVANNLAMGLG
 |..|..||..||..|..|.| . | |..||.  . . . | |.|.|.|||       .....||| |.     |   ...|   ||||.... ..  .|
GDPDRLHQVVWNLVDNAIKHTPEGGHITVRVHRDD-DHVRITVEDNGPGIPPEMHSIAEDIPRIFEPFYRTDPDSR-RKYGGGLTGLGLYICRRIVEQHG

GNRKIEVKSKVNEGTCFSFFILNR
|   |.| |....||.|.| .  .
GT--IWVESEPGGGTTFTFTLPLE
Kinase 17200.AA HATPase_c 636-750 27 5.8e-27 96.81 SMART 1-130 (130) Show / Hide 
Range on Protein: 636-750
Range on HMM: 1-130/130
Sequence Identity: 27% (40 aa)

SDQNRIKQVLLNLLSNSLKFTDK--------------GYIEIRVTSLNSNLIKIDVKDTGCGIPQ------DNLNKIFESFGNKQH--------SKFLNT
 |..|..|||.|||.|..|.|..              | |..||         | |.|.|.|||.      . ...||| |.            |.  ..
GDPDRLRQVLWNLLDNAIKHTPEGHADPDLHDGKPGGGRITVRVH-------RITVEDNGPGIPPEMHKSIEDIPRIFEPFYRTDDSPSRMCPDSRSRKY

QG--AGLGLSVANNLAMGLGGNRKIEVKSKVNEGTCFSFFILNRD
.|   |||||......  .||   |.|       |.|.| .  . 
GGGLTGLGLSICKRIVEQHGGT--IWVE------TTFTFTLPLER
REC 17200.AA REC 1152-1276 19 1.9e-19 71.84 SMART 1-150 (150) Show / Hide 
Range on Protein: 1152-1276
Range on HMM: 1-150/150
Sequence Identity: 19% (31 aa)

PKILAVDDN----DFNLYTIQ------IRLQQYAIR--------IDKASSGQ-------IAIDKCKQMY------IQNNCCQKYAAILMDIDMP------
..|| |||.      .. ...      . |..  ..        .| | .|.        |......        . .   ...  |.||| ||      
MRILIVDDDPAMAPVIREMLRNYTVIQRLLEKEGYENKMWMVEVVDEA-DGETLMNEIWEALELLQEHRDKKEDATTD-QSEPPDLIIMDIMMPGDPFED

-IKDGHQTTQEIIEFYNSYNLKIPMISACSAYVQESEKKKALQSGMQFYITKPIQTSQLEQFL
   || .....|             | ...|. .|. . .||..|.  |||||..  .| . .
GGMDGIELCRRIR-----------PIIMLTAHDDEEDRVRALEAGADDYITKPFDPEELLARI
Response_reg 17200.AA Response_reg 1154-1277 25 1.7e-13 50.87 Pfam 1-115 (115) Show / Hide 
Range on Protein: 1154-1277
Range on HMM: 1-115/115
Sequence Identity: 25% (32 aa)

ILAVDDNDFNLYTIQIRLQ-QYAI-RIDKASSGQIAIDKCKQMYIQNNCCQKYAAILMDIDMPIKDGHQTTQEI-IEFYNSYNLKIPMISACSAYVQESE
.| |||.. ..  ..  |. .. . ... |..|. |.......         .  |.|||.||  || .....|  . . .....| |   |.|. .|. 
VLIVDDHPLMREGLRQILEQKEGYEVVAEADDGEEALEWWQEHH--------PDLIIMDINMPGMDGLELCRRIRRQHP-HPQTPIIM---CTAHGDEDD

KKKALQSGMQFYITKPIQTSQLEQFLE
. .||| |.  |||||.   .| . ..
AVEALQAGANDYITKPFDPDELHAAIR