Gene AdckB1 (Slime mold)

AdckB1

Species: Slime mold
Alias: DDB0229418, AdckB1, abkB, DdisK248
External Links: DictyBase Link ,
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B

Sequence

Name Sequence Type Origin Length Description Download
AdckB1.AA Protein None 668 None Fasta, JSON
AdckB1.kin_dom Protein Kinase Domain None 8 None Fasta, JSON

Protein domain

Protein domains of AdckB1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase AdckB1.AA ABC1 303-422 36 3.2e-37 129.99 In-house 2-123 (123) Show / Hide 
Range on Protein: 303-422
Range on HMM: 2-123/123
Sequence Identity: 36% (46 aa)

ETGKHPDDMFIDFERLPINSASLAQVHKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYITLFFP-----SFQFSWILGEASSCLSQELDFV
. |  ..| |  |.  |. .||.||||.||||   |   .||||||.||.   ...|.. .  |...  .|||     .| ..|.. |. . | .|.|| 
DLG-NWEDVFSEFDEKPFAAASIAQVHRAKLK---D-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFN

NEAKNSEKMKQLFI--GNQQLSIPKVY
|||.|.||..|||   . ... .|...
NEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase AdckB1.AA ABC1-B 303-422 39 7.6e-36 125.41 In-house 2-125 (125) Show / Hide 
Range on Protein: 303-422
Range on HMM: 2-125/125
Sequence Identity: 39% (51 aa)

ETGKHPDDMFIDFERLPINSASLAQVHKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYITLFFP------SFQFSWILGEASSCLSQELDF
  |  ..| |  |.  || .|||||||.|||.   |   .||||||.| |   | .||  .  ..    .|||      .| |.| . |. . | |||||
DLG-NIEDVFSEFDQKPIAAASLAQVHRAKLH---D-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDF

VNEAKNSEKMKQLFI---GNQQLSIPKVY
 |||.|.|| .|.|    .  .| .|...
YNEARNAEKCRQMFKKFKHFDFLYVPRIH
ABC1 AdckB1.AA ABC1 302-422 35 5.3e-35 119.96 Pfam 1-126 (126) Show / Hide 
Range on Protein: 302-422
Range on HMM: 1-126/126
Sequence Identity: 35% (46 aa)

IETGKHPDDMFIDFERLPINSASLAQVHKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYITLFFPS-----FQFSWILGEASSCLSQELDF
 |.|. ....|  |.. || .||.||||.|.||       |||||||.||.   . .|.. .  .......|||      |.. ||. |... | .|||.
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDD---GEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDY

VNEAKNSEKMKQLFIGN---QQLSIPKVY
 .||||.|.....| ..   . . .||||
RREAKNMERFRENFRHWHRQPWVYVPKVY
Kinase AdckB1.AA ABC1-A 315-369 41 9e-08 23.23 In-house 1-51 (216) Show / Hide 
Range on Protein: 315-369
Range on HMM: 1-51/216
Sequence Identity: 41% (23 aa)

FERLPINSASLAQVHKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTY
||  |   ||  |||.| ||       |||||.||||     . | ..|  |...
FEEMPFACASIGQVHQAVLK----DGREVAVKIQYPGVAESIDSDINNLMMVMNM
Kinase AdckB1.AA ABC1-A 390-447 36 3.1e-05 14.37 In-house 72-129 (216) Show / Hide 
Range on Protein: 390-447
Range on HMM: 72-129/216
Sequence Identity: 36% (21 aa)

LSQELDFVNEAKNSEKMKQLFIGNQQLSIPKVYWNHTTKRILTMEFIHGVRIDNREGL
| .| |   ||    |..||  . .   .|.|    .| |.|||| . |. ||  .||
LHWECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPIDQCQGL
Kinase AdckB1.AA ABC1-C 343-360 50 0.017476 3.02 In-house 1-18 (307) Show / Hide 
Range on Protein: 343-360
Range on HMM: 1-18/307
Sequence Identity: 50% (9 aa)

VAVKVQYPGLMNKFQKDM
|||||  |||. .   |.
VAVKVLHPGLLAQVHMDL
Kinase AdckB1.AA ABC1-C 469-486 66 0.000839 7.22 In-house 129-146 (307) Show / Hide 
Range on Protein: 469-486
Range on HMM: 129-146/307
Sequence Identity: 66% (12 aa)

IFVHGFLHSDPHPGNLLV
|||  | | | ||||.||
IFVDNFVHADLHPGNILV