ABC1

Species: Bakers Yeast
Alias: ABC1
External Links: Saccharomyces Genome Database Link ,
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-A

Sequence

Name Sequence Type Origin Length Description Download
ABC1.kin_dom Protein Kinase Domain Sugen global kinase HMM prediction 269 Kinase domain by global Sugen HMM Fasta, JSON
ABC1.AA Protein Refseq_NP 501 `multicopy suppressor of a cytochrome b mRNA translation defect, essential for the electron transfer in the bc1 complex; Abc1p [Saccharomyces cerevisiae]` Fasta, JSON

Protein domain

Protein domains of ABC1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1.AA ABC1-A 189-385 51 9.80000000001e-155 520.35 In-house 1-216 (216) Show / Hide
Range on Protein: 189-385
Range on HMM: 1-216/216
Sequence Identity: 51% (112 aa)

FDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKGLFLDKTIANARTELKWECDYNREARALQKFEALLKDDPAFEV
|   |.|.|||||||.|.|..|..|.||||||||.||||||.|.|.|....|...|||.|||..|..||.||.|||||.||||..|||..||||.|.|.|
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAESIDSDINNLMMVMNMSGMFPKGMFLDHFIDYARRELHWECDYQREARCMQKFRQLLKDWPFFYV

PHVFPEYTTDNIITMTRMEGTEIMKLPKASQETKNFISENIMRLCLE---------------EIATFKYMQTDPNWANFLYNGR----TKKIELLDFGAS
|||..||.||...||..|.|..|......|||..|.|..|||||||.               ||.....||||||||||.|...    ..|.||||||||
PHVIDEYCTDRVLTMELMYGFPIDQCQGLSQEIRNYICYNIMRLCLREVEYIFLSTFIIIDFEIFEWRFMQTDPNWANFFYDKHPKTGQHKVELLDFGAS

RPFAEDFILKYRKLLT
|....||...|.....
REYGKDFTDHYMQIIK

Kinase ABC1.AA ABC1 176-292 42 5.2e-65 222.28 In-house 1-123 (123) Show / Hide
Range on Protein: 176-292
Range on HMM: 1-123/123
Sequence Identity: 42% (53 aa)

KELGANWKTKFSKFDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKG-----LFLDKTIANARTELKWECDYNREA
..|| ||.  || ||. |.|||||.|||.|.|..||.|.||.|.|||.|.|..|.| ..|..........|     .||.... ....||.||||.|.||
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA

RALQKFEALLK--DDPAFEVPHVF
|...|...|.|  ..|.|.||...
RNAEKCRQLFKKFHWPFFYVPRIH

Kinase ABC1.AA ABC1 176-292 34 1e-54 186.24 Pfam 1-126 (126) Show / Hide
Range on Protein: 176-292
Range on HMM: 1-126/126
Sequence Identity: 34% (44 aa)

KELGANWKTKFSKFDKIPMAAASIGQVHAAELPS-GQRVVVKIQYPGVKESIDSDLNSLLMLLTASSLLPKG-----LFLDKTIANARTELKWECDYNRE
.|||..|. .|. ||..|.|||||.||| |.|.. |. |.||.|.||||.....|.. . .....  ....|     ..|..... .| .|.||.|| ||
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

ARALQKFEALLKDD---PAFEVPHVF
|..  .|  .....   |.. ||.|.
AKNMERFRENFRHWHRQPWVYVPKVY

Kinase ABC1.AA ABC1-B 176-231 44 6.8e-16 54.77 In-house 1-55 (125) Show / Hide
Range on Protein: 176-231
Range on HMM: 1-55/125
Sequence Identity: 44% (25 aa)

KELGANWKTKFSKFDKIPMAAASIGQVHAAELPSGQRVVVKIQYPGVKESIDSDLN
| || |    || ||. | ||||. ||| | |  |..| ||.|.| ...... |..
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMM