Gene taf-1 (Nematode worm)

taf-1

Species: Nematode worm
Alias: W04A8.7, aSWK442, TFIID/TAF1, taf-1, CE26022
External Links: Wormbase Link ,
Annotation: WormBase Genetic Map location: n/a, WormBase Physical Map location: I: 13869521-13895463

Classification

Group: Atypical
Family: TAF1

Sequence

Name Sequence Type Origin Length Description Download
taf-1.AA Protein Genbank 1792 None Fasta, JSON
taf-1.kin_dom Protein Kinase Domain None 3 None Fasta, JSON

Protein domain

Protein domains of taf-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
DUF3591 taf-1.AA DUF3591 489-692 31 2.6e-50 178.24 Pfam 1-215 (494) Show / Hide 
Range on Protein: 489-692
Range on HMM: 1-215/494
Sequence Identity: 31% (71 aa)

FNL--SNDDYYVPKAT-SKT-----LSNNSLLIQHSTPATNIATHFFPTHPSAFRLRYWHRTPFTRRIVRHWQPMRFQPIQTPV------KHQQRVAAMR
||.  |||.|| ..   ...     ..|  | |.||.||..    ........  .| .|| .|. .|         .| .. .      ||. | . .|
FNIIFSNDEYYDMLKENHQNKVRQTIGN--LNIEHSMPALRLQWPYYKVKLNKREARSFHRPHFQFYI---------RPGTQIWVRFSKLKHRKRKHDKR

EAMRQAQGGGEVFYMRDVQDLSGKD-ETLVMIEYSEEHPVILSQPGMASKMKNYFKRRQAND-SEPTFT-FGELAFSHQ---IPF--LGQLQPGQSLQSI
|  |.. ...||| ||. .||...|  ... .||.||.| ..|. ||.||..||.... ..| . |..  .|| .. |     ||  .|.. ||.  . .
EKERMGKDISEVFKMRTTKDLTLGDNSPVILMEYCEEYPPVMSNFGMGSKIINYYRKKHMEDTHRPKLDDIGETHVLHPQDKSPFWNFGHVHPGEIVPTL

ENMLYRAPIYLHKRQNTDFLLIRSMN
.| .|||||. ||  .||||.|||..
YNNMYRAPIFKHKPEPTDFLCIRSTT
DUF3591 taf-1.AA DUF3591 736-996 35 3.2e-82 284.28 Pfam 217-494 (494) Show / Hide 
Range on Protein: 736-996
Range on HMM: 217-494/494
Sequence Identity: 35% (98 aa)

ASSNFRWYIRPLPSIFVAGQQCPLYEVPSPNSKRATVFVRDFLFAFIYRLFWASDSSPRRLKMDDVRNAF-PHYAESNIRKRLKMCSTFVRQGS---ETY
.... ..|.|. . .|..||..|..||| |.|...| . ...| ...||||| . |...|....|.  .| |   |. .|.||| .  . |.|    . .
GGHGQKYYLRNIDHMFCVGQTFPVMEVPGPHSRKVTNMSKNRLKMIVYRLFWGQKSPRHRISIHDITKHFFPDQNEMQNRQRLKEFMKYQRDGGMDNQGW

WSLKPDFRLPSK-EEVLSMVTPEMCCAQYSMMAAEQRLKDAGYGEKYFFTP-----ENDEGSE---DEVTIEDEIKCAPWNTTRAFLASQREKCLLDQTG
| ||....||.. ||...|.||| ||. .|| ...|.|.||||... .|..      .|.. |   ..  |..| . |||||||.|. . . |..|   |
WKLKEGETLPDEFEEIRKMITPEDCCLYESMQVGQQHLEDAGYNNTDEFKRDYQQIQEDDDEETKKVQMKIDLEQMMAPWNTTRNFINATQGKAMLQLHG

IADPTGCGQGFSYVRV-SQKPH---KDENATPVPKKLVTGTNADLRKLPLKEAKQICRGYGVKEEEISALTRWEIIDV
 .|||||| |||..|. |.|..   ..| . . ||| |.||.|..|........|  | ||| ||||. . .|. ...
EGDPTGCGEGFSFIRTKSMKGGFLKQGEGPQDKPKKAVAGTRAKERGGHSYNVAQQQRLYGVPEEEIRRIWYWQKRSL
BROMO taf-1.AA BROMO 1454-1562 25 3.7e-25 90.81 SMART 1-118 (118) Show / Hide 
Range on Protein: 1454-1562
Range on HMM: 1-118/118
Sequence Identity: 25% (30 aa)

RADPKVVMSSMLTDIVNELKMI--------SGSDAFVTPVNSKK--VVDYYNIIKNPISLQEIKKKISEQSYLLRKDFLDDIKLMFDNSRMYNGDNNILT
. . . .....|  ......            .. |  ||. |.  . |||.|||||..|. ||||. .  |  ...|.||..|||.| ..||. . .  
DPK-QKKCQELLKEVMCHKHDHGDPMNRGRPYAWPFMQPVDRKELNYPDYYDIIKNPMDLKTIKKKLENHQYQSMEEFVDDFMLMFNNCMTYNEPDSEVY

LTAQQMLQLAGKRMIEREQ
  |... ..  ... | ..
KMAKKLQKFFEEKWREFPP
Bromodomain taf-1.AA Bromodomain 1465-1548 26 1.1e-18 63.24 Pfam 1-89 (89) Show / Hide 
Range on Protein: 1465-1548
Range on HMM: 1-89/89
Sequence Identity: 26% (24 aa)

LTDIVN--ELKMISGSDAFVTPV--NSKKVVDYYNIIKNPISLQEIKKKISEQSYLLR--KDFLDDIKLMFDNSRMYNGDNNILTLTAQQ
.  |..  ...    ...|  ||  . ... |||.|||.|..|..|..|. .. |     ..|. |..||. |...||| . ..   |..
CDQIMDMKYIMEHPICEPFWHPVDPDRDEYPDYYDIIKHPMDLSTIQQKLKNNKYR-NNIAEFWHDMELMWHNCMTYNGPDSPIYKDARK
Bromodomain taf-1.AA Bromodomain 1587-1670 31 6.3e-24 80.35 Pfam 1-89 (89) Show / Hide 
Range on Protein: 1587-1670
Range on HMM: 1-89/89
Sequence Identity: 31% (28 aa)

LGEIVQ--KMKNIPKSALFHTRV--DPKKIPAYYLKISDPMDLSIMEQKSKSQEYK-SIDEFLKDAEKIYTNSVVFNGAESVYSLKAKE
. .|.   .... | ...|.  |  |....| || .|..||||| ..|| |...|. .|.||..|.| ...|.. .|| .|..   |..
CDQIMDMKYIMEHPICEPFWHPVDPDRDEYPDYYDIIKHPMDLSTIQQKLKNNKYRNNIAEFWHDMELMWHNCMTYNGPDSPIYKDARK
BROMO taf-1.AA BROMO 1576-1684 24 4.4e-20 73.95 SMART 1-118 (118) Show / Hide 
Range on Protein: 1576-1684
Range on HMM: 1-118/118
Sequence Identity: 24% (29 aa)

DTNDLIGFSYLLGEIVQKMKNI--------PKSALFHTRVDPKK--IPAYYLKISDPMDLSIMEQKSKSQEYKSIDEFLKDAEKIYTNSVVFNGAESVYS
|   .  .. || |.. ....         | .. |.  ||.|.  .| ||  |  ||||. ...| .. .|.|..||..| . . .|   .|. .| . 
DPK-QKKCQELLKEVMCHKHDHGDPMNRGRPYAWPFMQPVDRKELNYPDYYDIIKNPMDLKTIKKKLENHQYQSMEEFVDDFMLMFNNCMTYNEPDSEVY

LKAKEMFEMAEMLVKDQMD
  ||.. .  | . .. ..
KMAKKLQKFFEEKWREFPP