Gene LRRIc-1 (S.moellendorffii)
LRRIc-1
Species: S.moellendorffii
Alias: LRRIc-1
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| LRRIc-1.AA | Protein | None | 120 | None | Fasta, JSON |
| LRRIc-1.NA | RNA | None | 360 | None | Fasta, JSON |
| LRRIc-1.kin_dom | Protein Kinase Domain | None | 89 | None | Fasta, JSON |
Protein domains of LRRIc-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| Kinase | LRRIc-1.AA | TKL-Unique | 29-113 | 34 | 2.6e-17 | 57.72 | In-house | 1-92 (290) | Show / Hide |
Range on Protein: 29-113 Range on HMM: 1-92/290 Sequence Identity: 34% (32 aa) FSRKLGEGGFGPVYHGILPDGHEIAVKVQSYDSKQGAN---EFFNEVQLLSRAH-HRHVVSLVGYCH----EANSRMLVYEYLSGGTLERSLH |. |.||||.|.||.|. . | ..|.|. . ... || ||| .... | | .| ..|||. .. . .| ||..||.| || FWNKIGEGGYGQVYKGKWR-GYPVAIKQFHPNEDSSNEMMQEFENEVNWMKKLHYHPNIVHYMGYCMDHQVYPPNMCIVMEYCPGGSLYDVLH |
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| Kinase | LRRIc-1.AA | TKL | 33-113 | 22 | 8.7e-17 | 56.99 | In-house | 1-130 (364) | Show / Hide |
Range on Protein: 33-113
Range on HMM: 1-130/364
Sequence Identity: 22% (29 aa)
LGEGGFGPVYHGILPD---------GHEIAVKVQSYDSKQG--------------------------ANEFFNEVQ-LLSRAHHRHVVSLVGYCHEANS-
.|.|||| ||.|.. | ..|||. . .. . ...|..|. ..|| .| ..|...||| . ..
IGSGGFGEVYKGKWRGWGGKCPSDTGKDVAVKKFKSHNDDEFTKNSQENNDNNNYSDMQLNDPEASWFRFFEEEEIMMMSRLRHPNIVQFMGYCCCPPCG
------------RMLVYEYLSGGTLERSLH
..|.|| .||.|. ||
CVCMHPVGPWGQLCIVMEYCPGGSLLHYLH
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| Kinase | LRRIc-1.AA | IRAK | 28-114 | 31 | 1.5e-16 | 55.33 | In-house | 2-96 (317) | Show / Hide |
Range on Protein: 28-114 Range on HMM: 2-96/317 Sequence Identity: 31% (30 aa) SFSRKLGEGGFGPVYHGILPDGHE--IAVK----VQSYDSKQGANEFFN---EVQLLSRAHHRHVVSLVGYCHEANSRMLVYEYLSGGTLERSLHG . ....|||||| ||.| . .. . ||| . . .. .| |.....| .| ..|.| ||| | |||.|...|.|| |.. HKDNRIGEGGFGCVYRGQW-KNTTGIYAVKKLKEMADMSWNEHWQRFQQSYNELKVCCRCRHPNIVPLYGYCTERQCHCLVYPYMPNGSLEDRLWC |
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| Kinase | LRRIc-1.AA | Pkinase_Tyr | 28-108 | 30 | 3.1e-14 | 48.84 | Pfam | 2-94 (270) | Show / Hide |
Range on Protein: 28-108 Range on HMM: 2-94/270 Sequence Identity: 30% (28 aa) SFSRKLGEGGFGPVYHGILP-----DGHEIAVKVQ--SYDSKQ-GANEFFNEVQLLSRA-HHRHVVSLVGYCH-EANS--RMLVYEYLSGGTL .| .||||| || ||.|.. .. . |||. .....| .|..|..... || ..|.|.| | . . ..| || .| | TFGKKLGEGAFGEVYKGTWKGDPDNTKIPVAVKMLKEGAMHEQNCREDFMREAKIMKQLGHHPNIVRLYGVCTDQGEPNQIYIVMEYMPHGDL |
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| Kinase | LRRIc-1.AA | TK | 27-113 | 19 | 1.1e-13 | 41.54 | In-house | 1-151 (486) | Show / Hide |
Range on Protein: 27-113 Range on HMM: 1-151/486 Sequence Identity: 19% (30 aa) ESFSRKLGEGGFG---PVYHGILPDG--------------------------HEIAVKVQSYDSKQGANEFFN-----------------EVQLLS--RA . .||||| || || |.. .. .. |||. .. . ..||| | .... ITLGKKLGEGQFGSFGEVYKGEWRGRNPWNGKRFPCHMTVTLKCKNGKEGGKTPVAVKMLKEGDAMSQEEFFDEEMHDRDGGEDFLEEAEEMKMMCHSLG HHRHVVSLVGYCHEA------------NSRMLVYEYLSGGT----LERSLH || ..|.|.|.|.. |.| || ..| | |. HHPNIVRLYGVCTQGEPKPCFEVVVHQEPWMIVMEYMPHGDMDGSLRDYLR |
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| Kinase | LRRIc-1.AA | TK-Unique | 29-109 | 24 | 2.2e-12 | 39.16 | In-house | 3-93 (294) | Show / Hide |
Range on Protein: 29-109 Range on HMM: 3-93/294 Sequence Identity: 24% (22 aa) FSRKLGEGGFGPVYHGILPD-------GHEIAVKVQS-YDSKQGANEFFNEVQLLSRAH-HRHVVSLVGYCHEA-NSRMLVYEYLSGGTLE . ...||| ||.|..| . . .||| . ... .|..| |... | ..|...|.| . .. |...||...|.|. VGDVIGEGAFGQVWRGEVWGIWKHWDKQKCVAVKMLKDNATDTDKQDFLKEIQMMKELGDHPNIVQCLGCCTKSDEPWMIIMEYCPCGNLQ |
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| Kinase | LRRIc-1.AA | ULK | 28-109 | 23 | 3.1e-12 | 39.08 | In-house | 2-108 (329) | Show / Hide |
Range on Protein: 28-109 Range on HMM: 2-108/329 Sequence Identity: 23% (25 aa) SFSRKLGEGGFGPVYHGI-LPD----GHEIAVKVQSYDS-KQGANE---------FFNEVQLLSRAH--------HRHVVSLVGYCHEA--NSRMLVYEY . ...||.| || || |. . . .|.|. . .. .| || . ||.... . . | ..| | .. .. | ...|| CLNHCLGKGSFGKVYKGRNKKTKDYVNEKVACKMIDKQKMNQKNNEQEGQYMWQLLKNEIKIMKKLKSPNRHKNHHPNIVKLYDWFETSNHNNIYIIMEY LSGGTLE ||.|| CNGGDLE |
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| Kinase | LRRIc-1.AA | ULK | 28-109 | 23 | 2.6e-11 | 36.45 | In-house | 2-105 (324) | Show / Hide |
Range on Protein: 28-109 Range on HMM: 2-105/324 Sequence Identity: 23% (25 aa) SFSRKLGEGGFG-PVYHGI-LPD---GHEIAVKVQS--YDSKQGAN--------EFFNEVQLLSRAH------HRHVVSLVGYCHEA--NSRMLVYEYLS . ...||.| || || |. . . .|.|. . . .|. . . ||.|.. . | |.| | .. .. | ...|| CLNHCLGKGSFGVKVYKGRNKKTNTQNQYVACKMIDKKKMNKKKNEQEGQYMWQLLKNEIQIMKKLKELKHPNH-HIVKLYDWFETSNHNNIYIIMEYCN GGTLE ||.|| GGDLE |
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| Kinase | LRRIc-1.AA | STE20 | 28-108 | 21 | 1.1e-10 | 35.53 | In-house | 2-95 (288) | Show / Hide |
Range on Protein: 28-108 Range on HMM: 2-95/288 Sequence Identity: 21% (20 aa) SFSRKLGEGGFGPVYHGIL-PDGHE----IAVKVQSYDSK----QGANEFFNEVQLLSRAHHRHVVSLVGYCHEA----NSRMLVYEYLSGGTL . .|.|.|..| || .. | | . .|.|. ..... . .. ..|.. ... .| ..|. | .. .| ||..||.| ELLEKIGQGSYGKVYKAYHKPTGEYCNQRVAIKKMNLEKCDNEQDEWEDIQKEISIMKQCKHPNIVKYYGSYLKDDTCDDELWIVMEYCGGGSL |
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| Kinase | LRRIc-1.AA | RTKE | 28-112 | 28 | 3.4e-10 | 30.93 | In-house | 2-103 (293) | Show / Hide |
Range on Protein: 28-112 Range on HMM: 2-103/293 Sequence Identity: 28% (29 aa) SFSRKLGEGGFGPVYHGILP----------------DGHEIA-VKVQSYDSKQGANEFFNEVQLLSRAHHRHVVSLVGYCHEANSRMLVYEYLSGGTLER | |.||.| || | .| .. . | | . || |. ... ||..|| |... ... .|.||||. || || TFMRALGSGEFGEVWLMTMPNHAHSPNYSKETISSEQQRSTRQVAVKTLHNHECHHEFVQEMTMMCKLHHPNVVHLLHVVQMKQHFMMVYEYMPGGQLED SL .| WL |
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| Kinase | LRRIc-1.AA | MLK | 27-119 | 21 | 6.2e-10 | 30.78 | In-house | 1-122 (291) | Show / Hide |
Range on Protein: 27-119 Range on HMM: 1-122/291 Sequence Identity: 21% (27 aa) ESFSRKLGEGGFGPVYHGILPDGHE-----IAVKV---------QSYDSKQGANEFFNEVQLLSRAH-HRHVVSLVGYCHEANS-RMLVYEYLSGGTLER |....|.|.|| |. | . . .||| ..| ... ....... ||. | .. ..| |.. .. .| ||..|| | . IQFHEWIGSGSFGKVWKGRW-RNKDIVAKIVAVKRVRARIFDKSDTYCEQWDFEMECRHLRILSHPNNHPCIIQFYGVCLQPPCHFCIVMEYCEGGSLYN SLHGK--------------IVYS |||. .||. VLHGARSKWMDANHNQKNDRVYD |
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| Kinase | LRRIc-1.AA | Pkinase | 27-108 | 25 | 4.2e-09 | 33.26 | Pfam | 1-91 (293) | Show / Hide |
Range on Protein: 27-108 Range on HMM: 1-91/293 Sequence Identity: 25% (23 aa) ESFSRKLGEGGFGPVYHGILPDGHE-IAVKVQSYDSKQGANE--FFN--EVQLLSRAHHRHVVSLVGYCHEANSRMLVYEYLSGG----TL . ||.|.|.|| ||... . . |||. ..... . .. |.|.. | .| ..| | ..... .. .| ||. || | YHIGRKIGSGSFGCVYKCHHKGTGKIVAVKIIKKRHEKSWKDQTHRRLSEIQIMKRLNHPNIVRLYDWFEDKDHIYMVMEYCEGGLYVMDL |
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